# List of top-scoring protein chains for TR429.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w2b5	144	8.074		
3bboF	259	18.79		
1omsA	121	20.04	d.241.2.1	93350
1p9yA	121	20.37	d.241.2.1	94402
1z1zA	131	32.36	d.323.1.1	124366
1ehsA	48	38.38	g.2.1.1	43998
2nnwA	376	57.18		
2vrhA	432	60.00		
1e96A	192	69.21	c.37.1.8	32007
1i4tD	192	69.38	c.37.1.8	61731
3b4uA	294	79.76		
2jrmA	65	83.16		
2o4xB	91	84.03		
2rgxA	206	84.83		
3be4A	217	85.72		
2e6nA	104	86.96