# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bvrH	252	1.474		
1ekbB	235	2.592	b.47.1.2	26282
2qh0A	138	4.111		
1kjwA	295	4.381	b.34.2.1,c.37.1.1	68643,68644
2pgbB	259	4.718		
2j01E	206	5.040		
2dkoB	103	7.374		
2uw1A	338	7.557		
1g4wR	383	9.062	a.24.11.1,c.45.1.2	16644,32692
1vqoB	338	10.00	b.43.3.2	120363
1vzqH	250	10.62		
1nmeB	92	11.77		
1sc3B	88	12.58		
1mhnA	59	13.33	b.34.9.1	84964
1nmsA	249	16.32	c.17.1.1	85879
1qxyA	252	16.41	d.127.1.1	96565
2hqxA	246	16.95	b.34.9.1	136675
1ehsA	48	18.01	g.2.1.1	43998
2q8oA	136	18.96		
1eaxA	241	20.38	b.47.1.2	64889
1o59A	355	23.47	b.18.1.22,b.18.1.22	92495,92496
2yrvA	117	23.65		
1iznB	277	26.04	e.43.1.2	83848
2oc3A	303	26.19		
2cf8H	257	27.47		
1q3lA	69	32.02	b.34.13.2	111652
2f71A	298	33.00	c.45.1.2	133070
1pyoB	105	33.02		
1q8iA	783	33.28	c.55.3.5,e.8.1.1	96208,96209
2q6fA	309	39.07		
2cm2A	304	40.96	c.45.1.2	130610
1qtnB	95	41.69		
1y7mA	164	43.59	b.160.1.1,d.7.1.1	122696,122697
2gm6A	208	44.39		
1ym0B	27	45.18		
1pfbA	55	45.97	b.34.13.2	94655
1ou8A	111	46.58	b.136.1.1	93543
1p15A	253	46.98	c.45.1.2	93894
2r98A	456	47.71		
2i1yA	301	47.89		
2fp3A	316	49.11		
2pigA	334	50.12		
1yfnA	118	51.42	b.136.1.1	123080
2pbnA	313	51.47		
1xttA	216	53.29	c.61.1.1	122300
2dsxA	52	53.37	g.41.5.1	131699
2pa5A	314	54.32		
1rb9A	52	58.02	g.41.5.1	45214
1l5wA	796	58.31	c.87.1.4	73605
1h8dH	260	61.61		
1wf7A	103	64.15	b.36.1.1	114577
1iroA	54	65.27	g.41.5.1	45223
1qstA	160	66.31	d.108.1.1	40804
2id0A	644	66.84		
2gfaA	119	68.71	b.34.9.1,b.34.9.1	135089,135090
1lufA	343	71.96	d.144.1.7	78223
1b13A	54	72.27	g.41.5.1	45227
2qrlA	394	72.30		
1n71A	180	73.48	d.108.1.1	85370
2b49A	287	75.24		
2h2zA	306	76.72		
1pn2A	280	77.88	d.38.1.4,d.38.1.4	94930,94931
2d9rA	104	78.25	b.129.2.1	131350
2vphA	100	78.29		
1eerA	166	80.71	a.26.1.2	16846
2ooqA	286	80.79		
2pvxA	54	82.09		
1ju2A	536	82.11	c.3.1.2,d.16.1.1	77169,77170
2h62A	114	82.95	g.17.1.2	136177
1qy1A	174	83.03	b.60.1.1	96568
1rzhL	281	84.41	f.26.1.1	98164
1xgsA	295	87.81	a.4.5.25,d.127.1.1	16216,41153
1pa1A	310	89.93	c.45.1.2	94404