# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bvrH 252 0.5337 1ekbB 235 1.247 b.47.1.2 26282 2pgbB 259 1.842 1g4wR 383 2.605 a.24.11.1,c.45.1.2 16644,32692 1vzqH 250 3.449 1mhnA 59 4.738 b.34.9.1 84964 2rc5A 314 6.093 2j01E 206 6.247 2yrvA 117 6.281 2hqxA 246 6.636 b.34.9.1 136675 2gm6A 208 7.139 1kjwA 295 7.287 b.34.2.1,c.37.1.1 68643,68644 1eaxA 241 8.748 b.47.1.2 64889 2dkoB 103 10.52 1sc3B 88 10.65 1nmeB 92 11.20 2cf8H 257 11.58 2pbnA 313 11.89 2uw1A 338 12.98 1p15A 253 13.74 c.45.1.2 93894 2oc3A 303 13.75 2qh0A 138 14.02 2q8oA 136 14.69 1iznB 277 15.23 e.43.1.2 83848 1uscA 178 16.78 b.45.1.2 99860 1vqoB 338 17.49 b.43.3.2 120363 2f71A 298 18.39 c.45.1.2 133070 2gfaA 119 22.42 b.34.9.1,b.34.9.1 135089,135090 2cm2A 304 22.70 c.45.1.2 130610 1h8dH 260 23.03 1y7mA 164 23.89 b.160.1.1,d.7.1.1 122696,122697 2ooqA 286 24.51 1nmsA 249 25.09 c.17.1.1 85879 2i1yA 301 25.46 2qqrA 118 27.34 1o59A 355 28.36 b.18.1.22,b.18.1.22 92495,92496 1q3lA 69 28.54 b.34.13.2 111652 1ehsA 48 29.84 g.2.1.1 43998 1uv4A 293 30.38 b.67.2.1 119705 2p0pA 126 30.39 2f9nA 245 30.45 2pa5A 314 31.69 1n71A 180 34.48 d.108.1.1 85370 1qxyA 252 34.53 d.127.1.1 96565 2b49A 287 34.54 1l5wA 796 35.44 c.87.1.4 73605 1q8iA 783 35.66 c.55.3.5,e.8.1.1 96208,96209 1nxmA 197 36.32 b.82.1.1 86385 1pa1A 310 36.60 c.45.1.2 94404 1qtnB 95 37.72 1pyoB 105 37.92 2cdpA 160 41.05 2q6fA 309 41.70 1pfbA 55 43.54 b.34.13.2 94655 1b7yA 350 44.31 d.104.1.1 40776 2hc1A 291 44.36 2h2zA 306 44.37 2qh7A 76 44.88 2ahoA 414 45.46 b.43.3.1,b.44.1.1,c.37.1.8 126767,126768,126769 1ym0B 27 46.41 1lyvA 306 47.95 c.45.1.2 74348 1i8dA 213 47.98 b.43.4.3,b.43.4.3 61953,61954 2bzlA 325 48.59 1xttA 216 49.52 c.61.1.1 122300 1kl9A 182 50.69 a.60.14.1,b.40.4.5 111574,111575 1lvoA 302 50.91 b.47.1.4 74284 2ql3A 209 52.69 1iznA 286 54.40 e.43.1.1 83847 1usyA 275 54.89 d.104.1.1 113422 2bj0A 203 55.85 1zc0A 309 56.65 2i75A 320 58.88 1qstA 160 58.89 d.108.1.1 40804 1kzlA 208 59.49 b.43.4.3,b.43.4.3 77635,77636 1pn2A 280 60.07 d.38.1.4,d.38.1.4 94930,94931 1lufA 343 60.27 d.144.1.7 78223 2dsxA 52 62.44 g.41.5.1 131699 2d9rA 104 65.13 b.129.2.1 131350 2r98A 456 66.32 2amdA 311 67.15 2p6xA 309 67.49 1rb9A 52 67.55 g.41.5.1 45214 1khcA 147 67.74 b.34.9.2 68608 2hft 218 70.41 2vsmA 416 71.68 1ok0A 74 71.91 b.5.1.1 93191 2r7dA 469 73.06 1zm8A 259 74.19 2shpA 525 74.83 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1xgsA 295 75.57 a.4.5.25,d.127.1.1 16216,41153 1fo0A 116 76.66 b.1.1.1 20610 2nw5A 360 77.64 1ou8A 111 77.65 b.136.1.1 93543 2pigA 334 78.50 3bs2A 148 79.07 1o7dE 126 79.52 2qrlA 394 79.81 1b13A 54 80.20 g.41.5.1 45227 1i6aA 219 80.28 c.94.1.1 61827 1iroA 54 81.17 g.41.5.1 45223 1yfnA 118 81.54 b.136.1.1 123080 1wchA 315 82.01 c.45.1.2 114508 2id0A 644 83.33 1wi5A 119 83.51 b.40.4.5 114661 1eerA 166 83.65 a.26.1.2 16846 1bj7 156 84.14 1z85A 234 84.88 2f4lA 297 84.92 b.23.3.1 132927 2f4pA 147 86.09 b.82.1.9 132933 1vqoQ 96 88.44 b.34.5.1 120378 2pvxA 54 88.57 1ju2A 536 89.05 c.3.1.2,d.16.1.1 77169,77170 2vlgA 111 89.55 2bdgA 223 89.59