# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bvrH	252	0.7508		
1ekbB	235	0.9166	b.47.1.2	26282
2j01E	206	2.493		
2pgbB	259	2.831		
1vqoB	338	3.226	b.43.3.2	120363
2uw1A	338	4.043		
2dkoB	103	4.982		
1vzqH	250	5.906		
1g4wR	383	6.600	a.24.11.1,c.45.1.2	16644,32692
1kjwA	295	6.904	b.34.2.1,c.37.1.1	68643,68644
1sc3B	88	6.967		
1nmeB	92	7.177		
2q8oA	136	7.239		
1ehsA	48	7.653	g.2.1.1	43998
2gm6A	208	9.270		
1eaxA	241	9.620	b.47.1.2	64889
1o59A	355	13.93	b.18.1.22,b.18.1.22	92495,92496
2qh0A	138	15.62		
1nmsA	249	16.20	c.17.1.1	85879
1pyoB	105	16.60		
2pbnA	313	17.80		
1mhnA	59	21.28	b.34.9.1	84964
2cf8H	257	21.31		
2oc3A	303	21.43		
1qtnB	95	23.95		
1iznB	277	24.30	e.43.1.2	83848
2fp3A	316	31.06		
2f71A	298	32.07	c.45.1.2	133070
1ym0B	27	32.16		
1h8dH	260	34.99		
2cm2A	304	36.21	c.45.1.2	130610
2r98A	456	36.44		
2i1yA	301	36.70		
1p15A	253	39.79	c.45.1.2	93894
1q3lA	69	40.21	b.34.13.2	111652
1y7mA	164	40.67	b.160.1.1,d.7.1.1	122696,122697
2f9nA	245	42.07		
1cfbA	205	43.25	b.1.2.1,b.1.2.1	21991,21992
2ooqA	286	43.53		
2dsxA	52	47.55	g.41.5.1	131699
1wijA	140	49.69	a.140.5.1	114674
2hc1A	291	50.21		
2b49A	287	52.65		
1b13A	54	53.03	g.41.5.1	45227
1iroA	54	53.95	g.41.5.1	45223
1rb9A	52	54.77	g.41.5.1	45214
2pvxA	54	54.93		
1kzlA	208	55.51	b.43.4.3,b.43.4.3	77635,77636
1qstA	160	55.52	d.108.1.1	40804
1lfpA	249	56.05	e.39.1.1	73885
1i8dA	213	56.63	b.43.4.3,b.43.4.3	61953,61954
2id0A	644	57.12		
2pa5A	314	57.32		
1qxyA	252	59.22	d.127.1.1	96565
1ou8A	111	60.08	b.136.1.1	93543
1pfbA	55	61.91	b.34.13.2	94655
1yfnA	118	62.82	b.136.1.1	123080
2yrvA	117	63.99		
2i75A	320	64.59		
1eerA	166	64.79	a.26.1.2	16846
1pa1A	310	65.91	c.45.1.2	94404
1uscA	178	67.11	b.45.1.2	99860
2hqxA	246	71.85	b.34.9.1	136675
1mw7A	240	72.79	e.39.1.1	79557
1n71A	180	73.12	d.108.1.1	85370
1vqoQ	96	73.61	b.34.5.1	120378
1z1zA	131	75.58	d.323.1.1	124366
2uubQ	105	77.42	b.40.4.5	139948
1mg4A	113	78.90	d.15.11.1	84953
1zzaA	90	79.12		
1u0kA	288	79.65	d.21.1.2,d.21.1.2	107547,107548
1fo0A	116	81.33	b.1.1.1	20610
1kmvA	186	81.77	c.71.1.1	72757
1yk4A	52	83.13		
1a0lA	244	83.48	b.47.1.2	26286
2gfaA	119	83.73	b.34.9.1,b.34.9.1	135089,135090
2vqeQ	105	84.07		
2fdxA	138	85.48	c.23.5.1	31192
2bzlA	325	85.56		
1konA	249	86.28	e.39.1.1	72823