# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2uw1A	338	3.456		
2dkoB	103	5.371		
1nmsA	249	5.740	c.17.1.1	85879
1nmeB	92	7.964		
1vqoB	338	14.25	b.43.3.2	120363
2j01E	206	17.14		
2fp3A	316	18.83		
1mhnA	59	20.55	b.34.9.1	84964
1z1zA	131	21.81	d.323.1.1	124366
2bvrH	252	23.41		
1kjwA	295	23.58	b.34.2.1,c.37.1.1	68643,68644
1pyoB	105	28.38		
1sc3B	88	29.17		
1ybdA	239	32.03	c.73.1.3	122884
1inpA	400	38.56	e.7.1.1	42972
1apyB	141	47.54		
2pgbB	259	49.63		
1b13A	54	49.82	g.41.5.1	45227
2pvxA	54	56.74		
2gm6A	208	56.94		
3bjeA	349	62.85		
2bkdN	134	65.50		
1iroA	54	65.89	g.41.5.1	45223
2p0pA	126	67.39		
1rb9A	52	68.29	g.41.5.1	45214
1yk4A	52	68.80		
1wijA	140	71.52	a.140.5.1	114674
2bneA	241	73.05	c.73.1.3	128824
1rzhL	281	74.01	f.26.1.1	98164
2yrvA	117	74.66		
1g4wR	383	75.68	a.24.11.1,c.45.1.2	16644,32692
1q3lA	69	75.83	b.34.13.2	111652
1ehsA	48	76.62	g.2.1.1	43998
1oq9A	363	76.88	a.25.1.2	87257
1ou8A	111	78.77	b.136.1.1	93543
1ekbB	235	78.81	b.47.1.2	26282
2gagA	965	79.85		
2dsxA	52	80.23	g.41.5.1	131699
2je6I	251	80.68		
3bbyA	215	83.10		
2v89A	82	83.27		
2pveA	54	83.27		
1uj8A	77	87.99	a.159.5.1	119683