# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bvrH 252 1.005 2ffeA 311 1.808 c.143.1.1 133381 1ihgA 370 2.013 a.118.8.1,b.62.1.1 62380,62381 2gm6A 208 2.597 1nmsA 249 3.708 c.17.1.1 85879 1hp1A 516 3.883 d.114.1.1,d.159.1.2 70976,70977 1eaxA 241 4.226 b.47.1.2 64889 2pgbB 259 4.661 3c3dA 311 5.109 2bpa1 426 5.492 1suwA 249 9.191 e.52.1.1 106027 2cf8H 257 9.274 2i5nL 273 10.11 f.26.1.1 137066 1uv4A 293 10.70 b.67.2.1 119705 3bmvA 683 10.89 1hc7A 477 11.82 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2exrA 524 12.34 1umdA 367 13.17 c.36.1.11 99599 1h8dH 260 13.93 2j01E 206 14.90 1kyfA 247 15.63 b.1.10.1,d.105.1.1 73220,73221 2qv6A 268 18.65 1y1nA 291 18.76 1gvnB 287 19.02 c.37.1.21 76354 1d0cA 444 20.19 d.174.1.1 64769 1ktbA 405 20.24 b.71.1.1,c.1.8.1 72960,72961 2id0A 644 20.53 1uylA 236 20.95 d.122.1.1 108147 1qxoA 388 23.33 d.258.1.1 96539 2p4dA 172 23.59 1f46A 140 24.21 d.129.4.1 59643 1nmeB 92 25.33 1d3cA 686 28.16 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2vgaA 207 28.89 1jlwA 219 29.51 a.45.1.1,c.47.1.5 71741,71742 1m7sA 484 30.30 e.5.1.1 74574 1ia8A 289 31.84 d.144.1.7 62112 1vqoB 338 33.06 b.43.3.2 120363 1kbpA 432 33.97 b.1.12.1,d.159.1.1 22349,42068 1n4kA 381 35.70 a.118.22.1,b.42.6.1 79992,79993 1sc3B 88 37.17 2vn6A 151 39.70 1gctA 245 40.03 b.47.1.2 26021 3d9aH 210 40.77 1phkA 298 41.36 d.144.1.7 41635 2hzbA 333 41.46 c.143.1.1 136911 2hqxA 246 41.92 b.34.9.1 136675 1i8dA 213 41.96 b.43.4.3,b.43.4.3 61953,61954 1yymG 313 42.01 d.172.1.1 124232 1ehsA 48 44.89 g.2.1.1 43998 1wthD 391 45.22 b.106.1.1,b.106.1.1 121268,121269 2vcyA 344 46.53 1qwyA 291 46.84 b.84.3.2 96509 1m7vA 363 47.92 d.174.1.1 78748 1bg1A 722 48.41 a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1rb9A 52 49.09 g.41.5.1 45214 1pyoB 105 50.08 2iufA 688 50.53 2cztA 167 51.62 2vidA 204 52.26 2r98A 456 52.39 2ervA 150 53.64 1y7mA 164 55.19 b.160.1.1,d.7.1.1 122696,122697 3bijA 285 56.81 1njhA 119 57.10 b.128.1.1 85787 1qtnB 95 57.92 1j7gA 144 57.96 c.110.1.1 84130 1vjkA 98 62.00 d.15.3.1 108631 2bz6H 254 62.34 b.47.1.2 129552 3brzA 439 62.95 2dkoB 103 63.43 1zkcA 197 64.37 b.62.1.1 125182 1a12A 413 65.10 b.69.5.1 27663 1wn1A 356 65.47 2ootA 709 65.81 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 2f01A 127 65.90 b.61.1.1 132647 2dq6A 870 66.16 1atiA 505 66.53 c.51.1.1,d.104.1.1 33196,40745 2zctA 249 67.43 2nw5A 360 67.50 3cskA 711 67.77 2qh0A 138 68.40 2aiqA 231 69.90 2aaaA 484 71.46 b.71.1.1,c.1.8.1 27777,28764 3tssA 194 76.25 b.40.2.2,d.15.6.1 25160,37749 1ez0A 510 76.94 c.82.1.1 35385 2b18A 164 77.35 2durA 253 77.70 3cngA 189 79.93 1mhnA 59 80.25 b.34.9.1 84964 1y8tA 324 80.55 b.36.1.4,b.47.1.1 122763,122764 1uscA 178 81.64 b.45.1.2 99860 1gz8A 299 82.07 d.144.1.7 83405 2o57A 297 85.19 2c4xA 260 85.41 1bw0A 416 85.88 c.67.1.1 34385 2olnA 397 87.04 1cghA 224 88.49 b.47.1.2 26290 1oq9A 363 89.37 a.25.1.2 87257