# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekbB	235	0.3486	b.47.1.2	26282
2bvrH	252	0.5013		
2pgbB	259	2.133		
2j01E	206	2.426		
2dkoB	103	2.564		
2uw1A	338	2.602		
1kjwA	295	2.852	b.34.2.1,c.37.1.1	68643,68644
1eaxA	241	2.870	b.47.1.2	64889
1g4wR	383	3.386	a.24.11.1,c.45.1.2	16644,32692
1nmeB	92	3.400		
1vzqH	250	5.105		
1vqoB	338	5.192	b.43.3.2	120363
1o59A	355	5.207	b.18.1.22,b.18.1.22	92495,92496
1nmsA	249	5.874	c.17.1.1	85879
1sc3B	88	5.893		
2q8oA	136	7.275		
1ehsA	48	7.401	g.2.1.1	43998
2qh0A	138	8.933		
1pyoB	105	9.484		
2gm6A	208	10.66		
2oc3A	303	12.67		
2f71A	298	13.45	c.45.1.2	133070
2cf8H	257	13.97		
2f9nA	245	16.05		
1mhnA	59	17.83	b.34.9.1	84964
1qtnB	95	19.18		
2fp3A	316	19.98		
1cfbA	205	20.32	b.1.2.1,b.1.2.1	21991,21992
2cm2A	304	21.27	c.45.1.2	130610
2pbnA	313	23.37		
2hqxA	246	23.87	b.34.9.1	136675
1h8dH	260	24.76		
2i1yA	301	29.60		
1ju2A	536	30.28	c.3.1.2,d.16.1.1	77169,77170
1y7mA	164	30.98	b.160.1.1,d.7.1.1	122696,122697
1ym0B	27	31.34		
2dsxA	52	31.35	g.41.5.1	131699
1pa1A	310	31.66	c.45.1.2	94404
1a0lA	244	33.27	b.47.1.2	26286
1p15A	253	33.29	c.45.1.2	93894
1rb9A	52	33.49	g.41.5.1	45214
1eerA	166	34.90	a.26.1.2	16846
2ooqA	286	35.07		
1q3lA	69	35.21	b.34.13.2	111652
1iroA	54	40.18	g.41.5.1	45223
1ou8A	111	40.89	b.136.1.1	93543
1b13A	54	42.17	g.41.5.1	45227
2uubQ	105	44.46	b.40.4.5	139948
1yfnA	118	44.53	b.136.1.1	123080
1iznB	277	46.10	e.43.1.2	83848
2bdgA	223	46.96		
1lyvA	306	47.07	c.45.1.2	74348
1rzhL	281	47.42	f.26.1.1	98164
1vqoQ	96	47.54	b.34.5.1	120378
2pa5A	314	47.64		
2b49A	287	47.87		
1qxyA	252	48.28	d.127.1.1	96565
1z1zA	131	49.44	d.323.1.1	124366
2h62A	114	51.00	g.17.1.2	136177
2vqeQ	105	51.22		
2hc1A	291	51.45		
2id0A	644	52.63		
1nxmA	197	53.91	b.82.1.1	86385
1apyB	141	55.27		
1q8iA	783	56.88	c.55.3.5,e.8.1.1	96208,96209
2aiqA	231	56.97		
2yrvA	117	58.48		
2r98A	456	58.63		
2bzlA	325	59.59		
1i8dA	213	59.90	b.43.4.3,b.43.4.3	61953,61954
1oq9A	363	61.29	a.25.1.2	87257
2pvxA	54	63.29		
2gfaA	119	65.80	b.34.9.1,b.34.9.1	135089,135090
1kzlA	208	65.83	b.43.4.3,b.43.4.3	77635,77636
2i75A	320	66.38		
1iznA	286	66.75	e.43.1.1	83847
1pfbA	55	67.44	b.34.13.2	94655
2f86B	143	68.80		
2cdpA	160	69.11		
3cihA	739	71.31		
1igqA	62	73.03	b.34.1.3	66130
2e9yA	316	74.38		
2hft	218	76.08		
1rb9	53	78.74		
1tzpA	255	81.30	d.65.1.3	107520
2d9rA	104	81.95	b.129.2.1	131350
2pigA	334	83.24		
2vsmA	416	84.22