# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bvrH	252	0.9903		
2uw1A	338	1.072		
1ekbB	235	2.283	b.47.1.2	26282
2dkoB	103	3.380		
2pgbB	259	3.516		
1nmeB	92	4.809		
1sc3B	88	5.208		
1vzqH	250	6.832		
1ehsA	48	7.197	g.2.1.1	43998
1pyoB	105	9.722		
1nmsA	249	10.57	c.17.1.1	85879
2j01E	206	13.64		
1kjwA	295	16.14	b.34.2.1,c.37.1.1	68643,68644
1oq9A	363	16.28	a.25.1.2	87257
1eaxA	241	18.11	b.47.1.2	64889
1vqoB	338	19.29	b.43.3.2	120363
2q8oA	136	21.57		
1o59A	355	21.61	b.18.1.22,b.18.1.22	92495,92496
2gm6A	208	23.08		
2pbnA	313	25.08		
1rzhL	281	26.51	f.26.1.1	98164
1g4wR	383	28.17	a.24.11.1,c.45.1.2	16644,32692
2cf8H	257	29.74		
2fp3A	316	34.60		
2qh0A	138	35.05		
2oc3A	303	40.59		
1cfbA	205	40.71	b.1.2.1,b.1.2.1	21991,21992
1uscA	178	43.17	b.45.1.2	99860
1qtnB	95	43.75		
2f71A	298	44.16	c.45.1.2	133070
2cm2A	304	48.15	c.45.1.2	130610
2j2fA	363	48.76		
2hc1A	291	49.53		
1mhnA	59	50.35	b.34.9.1	84964
2i75A	320	50.43		
1y7mA	164	50.60	b.160.1.1,d.7.1.1	122696,122697
2i1yA	301	51.10		
1h8dH	260	54.72		
1ym0B	27	55.61		
1z1zA	131	57.24	d.323.1.1	124366
2f9nA	245	59.18		
1vqoQ	96	62.13	b.34.5.1	120378
2yrvA	117	62.20		
1nxmA	197	62.21	b.82.1.1	86385
2pa5A	314	63.41		
2b49A	287	68.74		
2bzlA	325	69.07		
1u0kA	288	71.82	d.21.1.2,d.21.1.2	107547,107548
1zxmA	400	72.88		
2dsxA	52	74.90	g.41.5.1	131699
1p15A	253	74.97	c.45.1.2	93894
1yarO	237	78.80		
1pa1A	310	79.77	c.45.1.2	94404
1rb9A	52	82.45	g.41.5.1	45214
1fcyA	236	85.82	a.123.1.1	19282
1wijA	140	85.92	a.140.5.1	114674
1a0lA	244	86.38	b.47.1.2	26286
2h62A	114	87.38	g.17.1.2	136177
2pvxA	54	88.25		
3cihA	739	89.84