# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bvrH	252	0.6735		
1ekbB	235	1.335	b.47.1.2	26282
2uw1A	338	1.613		
2pgbB	259	2.474		
2dkoB	103	2.537		
2j01E	206	2.932		
1vzqH	250	3.651		
1nmeB	92	3.927		
1vqoB	338	4.341	b.43.3.2	120363
1sc3B	88	4.546		
2q8oA	136	8.209		
1nmsA	249	8.438	c.17.1.1	85879
2gm6A	208	8.524		
1mhnA	59	9.083	b.34.9.1	84964
1ehsA	48	9.173	g.2.1.1	43998
1g4wR	383	9.340	a.24.11.1,c.45.1.2	16644,32692
1pyoB	105	9.844		
2cf8H	257	11.33		
1eaxA	241	13.96	b.47.1.2	64889
2qh0A	138	14.35		
1qtnB	95	16.46		
2pbnA	313	16.74		
1o59A	355	17.44	b.18.1.22,b.18.1.22	92495,92496
1kjwA	295	17.62	b.34.2.1,c.37.1.1	68643,68644
1cfbA	205	17.69	b.1.2.1,b.1.2.1	21991,21992
2cm2A	304	27.87	c.45.1.2	130610
2oc3A	303	28.02		
1h8dH	260	29.48		
2pa5A	314	29.73		
1y7mA	164	30.04	b.160.1.1,d.7.1.1	122696,122697
2f9nA	245	30.16		
2f71A	298	35.43	c.45.1.2	133070
1ym0B	27	35.46		
1p15A	253	36.87	c.45.1.2	93894
1oq9A	363	37.51	a.25.1.2	87257
1vqoQ	96	42.12	b.34.5.1	120378
2fp3A	316	45.52		
1kzlA	208	45.52	b.43.4.3,b.43.4.3	77635,77636
2b49A	287	45.53		
2hc1A	291	49.50		
2gfaA	119	50.96	b.34.9.1,b.34.9.1	135089,135090
2hqxA	246	52.65	b.34.9.1	136675
2yrvA	117	54.04		
3cihA	739	54.12		
1i8dA	213	54.28	b.43.4.3,b.43.4.3	61953,61954
2id0A	644	57.94		
1a0lA	244	58.89	b.47.1.2	26286
1rzhL	281	60.79	f.26.1.1	98164
1nxmA	197	62.90	b.82.1.1	86385
2i1yA	301	65.26		
1uscA	178	67.60	b.45.1.2	99860
1pa1A	310	68.22	c.45.1.2	94404
1idk	359	68.60		
1z1zA	131	70.01	d.323.1.1	124366
1vc3B	97	73.40		
3bs2A	148	73.74		
2f86B	143	74.07		
1apyB	141	74.74		
2ooqA	286	76.00		
2bzlA	325	77.19		
2i75A	320	77.89		
2h41A	95	78.45		
2dsxA	52	81.19	g.41.5.1	131699
2rc5A	314	81.83		
1qxyA	252	82.37	d.127.1.1	96565
2h62A	114	85.54	g.17.1.2	136177
2cdpA	160	85.60		
3bbyA	215	85.82		
1ju2A	536	86.21	c.3.1.2,d.16.1.1	77169,77170
1t5rA	284	86.25	f.6.1.1	106465
1q3lA	69	86.63	b.34.13.2	111652
1bxyA	60	87.76	d.59.1.1	39525