# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nmsA	249	2.954	c.17.1.1	85879
1vqoB	338	9.146	b.43.3.2	120363
1kjwA	295	13.86	b.34.2.1,c.37.1.1	68643,68644
2uw1A	338	23.85		
2j01E	206	26.48		
1rzhL	281	27.09	f.26.1.1	98164
2i5nL	273	27.42	f.26.1.1	137066
1inpA	400	35.74	e.7.1.1	42972
2dkoB	103	38.42		
2oc3A	303	39.92		
1nmeB	92	41.03		
1mhnA	59	48.23	b.34.9.1	84964
2q8oA	136	50.19		
2fp3A	316	59.87		
1rzhM	307	63.38	f.26.1.1	98165
2ovsA	118	79.38		
2fmmA	74	83.37	b.34.13.2	133782
1g4wR	383	85.48	a.24.11.1,c.45.1.2	16644,32692