# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f5kA 102 1.163 b.34.13.3 132995 1khcA 147 1.842 b.34.9.2 68608 2bkdN 134 2.244 2hqxA 246 2.750 b.34.9.1 136675 2f4lA 297 3.582 b.23.3.1 132927 1pfbA 55 4.208 b.34.13.2 94655 2p0pA 126 6.077 1mhnA 59 7.336 b.34.9.1 84964 2cu2A 337 8.767 7odcA 424 10.88 b.49.2.3,c.1.6.1 26488,28650 1uscA 178 11.41 b.45.1.2 99860 2je6I 251 11.94 1q3lA 69 12.37 b.34.13.2 111652 2nr4A 213 13.04 1vie 62 13.65 2qghA 425 13.73 2a19A 175 14.10 2qqrA 118 14.25 2j66A 428 15.47 2gqvA 62 16.15 b.34.4.1 135515 2yxxA 386 16.41 2nvaA 372 16.57 2fhdA 153 16.75 1vbvA 105 18.24 b.34.17.1 119965 1yoaA 159 18.36 b.45.1.2 123775 2ii1A 301 21.88 2pu9B 74 22.05 2qckA 167 22.25 1wgsA 133 22.51 b.34.13.3 114622 1g31A 111 23.49 b.35.1.1 24656 1bdoA 80 23.74 b.84.1.1 28214 2eqjA 66 24.86 2e8gA 241 24.89 2rh2A 62 26.30 2r0xA 158 26.80 1xesA 413 27.59 1kl9A 182 29.92 a.60.14.1,b.40.4.5 111574,111575 1uvqB 198 30.18 b.1.1.2,d.19.1.1 100064,100065 1fl0A 171 30.32 b.40.4.4 25315 2r6vA 191 30.48 2d5mA 190 30.81 1ejeA 192 31.92 b.45.1.2 25757 2vc8A 84 32.05 1oz2A 331 32.12 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1twiA 434 32.48 b.49.2.3,c.1.6.1 107399,107400 2p0kA 212 32.54 2p24B 259 34.11 2ptfA 233 34.88 1bdo 80 35.35 1kkhA 317 35.65 d.14.1.5,d.58.26.3 72645,72646 2h1eA 177 35.86 2bkhA 814 35.87 1vqoA 240 36.29 b.34.5.3,b.40.4.5 120361,120362 2pljA 419 36.66 2pi2A 270 36.91 2p3eA 420 37.28 1y0bA 197 37.59 c.61.1.1 122476 3bpkA 206 37.72 2g3rA 123 38.10 b.34.9.1,b.34.9.1 134570,134571 1q46A 175 39.47 a.60.14.1,b.40.4.5 111594,111595 2bzyA 67 40.15 2jh2A 148 40.52 2nptA 106 40.54 d.15.2.2 138448 1sa3A 262 43.95 c.52.1.23 105400 2ggrA 76 44.29 2ja9A 175 45.27 2a28A 54 46.00 1zboA 210 46.02 b.122.1.10 124859 1rz1A 161 46.55 b.45.1.2 98124 1xneA 113 46.89 b.122.1.6 115579 3cb0A 173 47.85 1k5nB 100 49.06 b.1.1.2 77268 2fmmA 74 50.81 b.34.13.2 133782 1vqoK 132 52.34 b.39.1.1 120372 1ybyA 215 52.40 2hhpA 530 52.90 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 1wfyA 104 53.66 d.15.1.5 114597 1wi0A 113 55.02 d.15.2.2 114657 2cs7A 55 55.58 d.9.2.1 130748 2o0tA 467 57.04 1s9jA 341 57.88 d.144.1.7 112049 1smxA 96 58.21 b.40.4.5 105772 1xniA 118 58.64 b.34.9.1,b.34.9.1 115582,115583 1yqbA 100 58.74 d.15.1.1 123876 1zuuA 58 61.53 b.34.2.1 125688 2r58A 265 62.61 3b9tA 484 63.49 1i0rA 169 63.69 b.45.1.2 61489 1u0mA 382 64.71 c.95.1.2,c.95.1.2 107557,107558 1mxgA 435 67.03 b.71.1.1,c.1.8.1 85193,85194 2rovA 117 67.93 1q3iA 214 68.31 d.220.1.1 104524 2hr0A 645 69.31 1n7zA 334 73.80 b.127.1.1 85380 2pe3A 354 73.97 1nd6A 354 74.94 c.60.1.2 80407 1xyiA 66 75.41 1vfsA 386 77.50 b.49.2.2,c.1.6.1 108584,108585 2bivA 243 78.58 b.34.9.3,b.34.9.3 128592,128593 2b3gA 123 80.85 b.40.4.3 127786 2volA 207 82.24 1hd3A 62 84.37 b.34.2.1 65802 2dcfA 392 84.49 1z85A 234 84.79 2v26A 784 85.98 1wj6A 101 88.52 d.15.2.2 114693