Best Alignments for TR429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1mhnA	1.3410e+00	1mhnA/TR429-1mhnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
2hqxA	2.4365e+01	2hqxA/TR429-2hqxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1nmeB	2.4724e+01	1nmeB/TR429-1nmeB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1khcA	2.6271e+01	1khcA/TR429-1khcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.2
1sc3B	2.7106e+01	1sc3B/TR429-1sc3B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dkoB	2.8494e+01	2dkoB/TR429-2dkoB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qtnB	3.1620e+01	1qtnB/TR429-1qtnB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2oc3A	3.8834e+01	2oc3A/TR429-2oc3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ehsA	3.8917e+01	1ehsA/TR429-1ehsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.2.1.1
2bkdN	3.9101e+01	2bkdN/TR429-2bkdN-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pdqA	4.0529e+01	1pdqA/TR429-1pdqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
2qdeA	4.7992e+01	2qdeA/TR429-2qdeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pyoB	4.9102e+01	1pyoB/TR429-1pyoB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1d2eA	5.1454e+01	1d2eA/TR429-1d2eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.43.3.1 b.44.1.1 c.37.1.8
1o59A	5.1603e+01	1o59A/TR429-1o59A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.18.1.22 b.18.1.22
1jj2B	5.2680e+01	1jj2B/TR429-1jj2B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.43.3.2
1pysA	5.5756e+01	1pysA/TR429-1pysA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.104.1.1
2fp3A	5.7090e+01	2fp3A/TR429-2fp3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ar9A	6.2219e+01	2ar9A/TR429-2ar9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2yrvA	6.7332e+01	2yrvA/TR429-2yrvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001