# List of top-scoring protein chains for TR429.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w2b5	144	11.61		
3bboF	259	29.30		
1p9yA	121	31.82	d.241.2.1	94402
1omsA	121	31.92	d.241.2.1	93350
1ehsA	48	32.13	g.2.1.1	43998
3be4A	217	40.39		
1e96A	192	41.31	c.37.1.8	32007
1i4tD	192	41.52	c.37.1.8	61731
1z1zA	131	45.69	d.323.1.1	124366
2iukA	864	61.20		
2jp2A	126	68.32		
2nnwA	376	68.34		
2o4xB	91	68.93		
2jrmA	65	69.27		
1sg3A	349	70.79	b.18.1.22,b.18.1.22	98847,98848
2e6nA	104	71.32		
1o59A	355	73.40	b.18.1.22,b.18.1.22	92495,92496
3b4uA	294	80.69		
2bgxA	261	81.88	a.20.1.1,d.118.1.1	128504,128505
2rgxA	206	86.94