# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.4322 b.34.9.1 84964 2hqxA 246 10.53 b.34.9.1 136675 1d2eA 397 10.60 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1qtnB 95 10.72 2dkoB 103 11.32 1sc3B 88 11.88 1nmeB 92 12.06 2oc3A 303 13.55 1pdqA 72 14.46 b.34.13.2 94590 1khcA 147 16.01 b.34.9.2 68608 2q8kA 401 16.73 1ehsA 48 20.01 g.2.1.1 43998 1o59A 355 22.63 b.18.1.22,b.18.1.22 92495,92496 1pysA 350 25.78 d.104.1.1 40775 2yrvA 117 27.26 2bkdN 134 28.50 1iznB 277 29.39 e.43.1.2 83848 2jepA 395 32.06 1xttA 216 33.58 c.61.1.1 122300 1t3lA 337 35.36 b.34.2.1,c.37.1.1 106358,106359 1dl2A 511 36.49 a.102.2.1 18844 1xnzA 264 36.94 d.127.1.1 115673 1avqA 228 37.74 c.52.1.13 33326 1qxrA 189 38.44 b.82.1.7 96552 2ccvA 101 40.39 b.154.1.1 130258 1ve0A 134 41.38 1b6aA 478 43.72 a.4.5.25,d.127.1.1 16223,41160 1wl8A 189 43.98 c.23.16.1 120997 1ym0B 27 44.54 1w96A 554 45.37 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1qstA 160 46.91 d.108.1.1 40804 2fp3A 316 49.46 1vbvA 105 50.91 b.34.17.1 119965 2ar9A 278 51.25 2cm2A 304 51.57 c.45.1.2 130610 1uf5A 303 51.98 d.160.1.2 107808 1a64A 97 52.02 b.1.1.1 19750 2qdeA 397 53.48 1jj2B 337 55.08 b.43.3.2 63086 2r7dA 469 55.74 2bwvA 440 55.82 c.55.2.1,d.127.1.1 129387,129388 1ok0A 74 56.33 b.5.1.1 93191 2i75A 320 58.93 1ou8A 111 59.23 b.136.1.1 93543 1yfnA 118 60.13 b.136.1.1 123080 1hoe 74 60.23 1zi0A 307 60.26 1c1dA 355 60.44 c.2.1.7,c.58.1.1 30270,33918 1g7fA 298 61.40 c.45.1.2 60330 1g4wR 383 63.19 a.24.11.1,c.45.1.2 16644,32692 1pyoB 105 63.76 2qdxA 257 66.12 1aipA 405 67.33 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1wf7A 103 67.94 b.36.1.1 114577 1wchA 315 69.14 c.45.1.2 114508 1xxpA 306 69.39 c.45.1.2 122423 1u7iA 136 71.34 d.32.1.7 107724 1qxyA 252 71.35 d.127.1.1 96565 2bvpA 276 71.49 b.1.1.2,d.19.1.1 129291,129292 1ptvA 321 71.50 c.45.1.2 32665 2f71A 298 72.33 c.45.1.2 133070 1pm4A 119 74.60 b.135.1.1 94891 1wl9A 440 75.16 c.55.2.1,d.127.1.1 120998,120999 1wgsA 133 75.53 b.34.13.3 114622 1d3yA 301 75.66 e.12.1.1 43252 1gpc 218 76.46 1o0xA 262 77.44 d.127.1.1 80755 2j01E 206 78.21 2c78A 405 78.99 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2f4eA 180 80.22 1m70A 190 82.54 a.3.1.4,a.3.1.4 91200,91201 2dsxA 52 85.04 g.41.5.1 131699 1z2kA 109 87.22 1lyvA 306 87.27 c.45.1.2 74348 1igqA 62 87.45 b.34.1.3 66130 1pa1A 310 89.52 c.45.1.2 94404 2i1yA 301 89.65