# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.1155 b.34.9.1 84964 1khcA 147 2.509 b.34.9.2 68608 1d2eA 397 4.331 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2hqxA 246 4.784 b.34.9.1 136675 2bkdN 134 8.467 2yrvA 117 9.035 1sc3B 88 10.26 2oc3A 303 11.01 1nmeB 92 12.51 1qtnB 95 13.67 1pysA 350 13.68 d.104.1.1 40775 2dkoB 103 13.76 1qxrA 189 17.00 b.82.1.7 96552 2qdeA 397 19.43 1wgsA 133 19.94 b.34.13.3 114622 2ivwA 113 20.59 1c1dA 355 21.03 c.2.1.7,c.58.1.1 30270,33918 1u7iA 136 21.17 d.32.1.7 107724 2p0pA 126 21.48 1t3lA 337 22.04 b.34.2.1,c.37.1.1 106358,106359 2c78A 405 22.96 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1xttA 216 23.76 c.61.1.1 122300 1aipA 405 24.01 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1ehsA 48 25.61 g.2.1.1 43998 2qdxA 257 26.39 1pdqA 72 29.31 b.34.13.2 94590 1d3yA 301 29.69 e.12.1.1 43252 1vbvA 105 29.84 b.34.17.1 119965 2ccvA 101 30.91 b.154.1.1 130258 1g4wR 383 33.61 a.24.11.1,c.45.1.2 16644,32692 1wl8A 189 34.16 c.23.16.1 120997 1uv4A 293 34.23 b.67.2.1 119705 2j01E 206 36.01 1o59A 355 37.56 b.18.1.22,b.18.1.22 92495,92496 2vcyA 344 37.89 2cm2A 304 39.05 c.45.1.2 130610 2r7dA 469 39.95 2pbnA 313 42.54 1ve0A 134 42.55 1zi0A 307 42.74 2q8kA 401 43.53 2i75A 320 43.94 1zunB 434 43.96 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1avqA 228 44.76 c.52.1.13 33326 1m1qA 91 46.80 a.138.1.3 74419 2gfaA 119 46.87 b.34.9.1,b.34.9.1 135089,135090 1qstA 160 47.76 d.108.1.1 40804 1w96A 554 49.23 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1xxpA 306 49.82 c.45.1.2 122423 2f5kA 102 49.99 b.34.13.3 132995 2qqrA 118 54.88 2i1yA 301 55.13 1dl2A 511 55.70 a.102.2.1 18844 2ar9A 278 56.55 1g7fA 298 56.92 c.45.1.2 60330 2pceA 386 56.98 1ym0B 27 58.41 1wchA 315 58.75 c.45.1.2 114508 1jj2B 337 60.40 b.43.3.2 63086 2e63A 170 60.83 2qj8A 332 62.01 1xuvA 178 63.15 d.129.3.5 116069 1pyoB 105 63.34 2fp3A 316 63.73 1ptvA 321 64.41 c.45.1.2 32665 2f71A 298 65.05 c.45.1.2 133070 2cyeA 133 65.88 d.38.1.1 131021 1ok0A 74 66.95 b.5.1.1 93191 1wleA 501 68.52 1hoe 74 70.01 1z2kA 109 71.58 1i8dA 213 71.68 b.43.4.3,b.43.4.3 61953,61954 1k0rA 366 71.84 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 2d9rA 104 73.34 b.129.2.1 131350 1a64A 97 73.55 b.1.1.1 19750 1pa1A 310 74.44 c.45.1.2 94404 2cxvA 219 74.90 b.47.1.4 131012 1dlcA 584 77.15 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1mi8A 158 78.02 b.86.1.2 91279 1gpc 218 83.53 1pn2A 280 83.63 d.38.1.4,d.38.1.4 94930,94931 1zt1A 277 84.04 1ytw 306 84.20 2f4eA 180 86.06 2bvpA 276 86.53 b.1.1.2,d.19.1.1 129291,129292 1ou8A 111 88.64 b.136.1.1 93543 2dsxA 52 89.66 g.41.5.1 131699