# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	0.2774	b.34.9.1	84964
1sc3B	88	10.19		
1ehsA	48	11.46	g.2.1.1	43998
2jepA	395	11.69		
1nmeB	92	11.76		
1qtnB	95	14.15		
1jj2B	337	15.01	b.43.3.2	63086
2dkoB	103	15.10		
1o59A	355	16.47	b.18.1.22,b.18.1.22	92495,92496
1khcA	147	21.30	b.34.9.2	68608
2oc3A	303	21.88		
1d2eA	397	24.77	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1vqoB	338	29.15	b.43.3.2	120363
2hqxA	246	29.79	b.34.9.1	136675
2j01E	206	30.14		
1pysA	350	30.99	d.104.1.1	40775
2qdeA	397	34.05		
1pdqA	72	34.95	b.34.13.2	94590
2ccvA	101	35.08	b.154.1.1	130258
2bkdN	134	36.32		
1ym0B	27	36.45		
1ve0A	134	41.61		
2cm2A	304	43.78	c.45.1.2	130610
1t3lA	337	45.09	b.34.2.1,c.37.1.1	106358,106359
1d3yA	301	46.42	e.12.1.1	43252
2yrvA	117	49.24		
3cwqA	209	49.51		
2pbnA	313	50.26		
2f71A	298	52.84	c.45.1.2	133070
1pyoB	105	54.39		
1avqA	228	57.59	c.52.1.13	33326
2qj8A	332	59.76		
1wl8A	189	59.77	c.23.16.1	120997
1wf7A	103	60.81	b.36.1.1	114577
1iznB	277	61.09	e.43.1.2	83848
2q8kA	401	61.50		
1xttA	216	62.45	c.61.1.1	122300
2r7dA	469	64.87		
1c1dA	355	65.83	c.2.1.7,c.58.1.1	30270,33918
2ivwA	113	67.00		
1i8dA	213	67.07	b.43.4.3,b.43.4.3	61953,61954
2dsxA	52	67.11	g.41.5.1	131699
1yfnA	118	68.39	b.136.1.1	123080
1g4wR	383	69.36	a.24.11.1,c.45.1.2	16644,32692
1g7fA	298	69.99	c.45.1.2	60330
1vbvA	105	72.32	b.34.17.1	119965
2i75A	320	74.43		
2fp3A	316	76.05		
1iroA	54	76.11	g.41.5.1	45223
1edgA	380	77.05	c.1.8.3	28807
1dlcA	584	77.45	b.18.1.3,b.77.2.1,f.1.3.1	23719,27976,43391
1mi8A	158	78.03	b.86.1.2	91279
1ou8A	111	79.15	b.136.1.1	93543
2ar9A	278	82.47		
1b13A	54	83.84	g.41.5.1	45227
1z2kA	109	86.62		
2qdxA	257	88.59		
1kzlA	208	89.05	b.43.4.3,b.43.4.3	77635,77636