# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.381	b.34.9.1	84964
1khcA	147	9.98	b.34.9.2	68608
2fp3A	316	10.92		
2ar9A	278	12.54		
1nmeB	92	14.53		
2dkoB	103	15.67		
1sc3B	88	23.21		
1m70A	190	25.02	a.3.1.4,a.3.1.4	91200,91201
2bkdN	134	28.76		
1pdqA	72	36.41	b.34.13.2	94590
1jj2B	337	36.54	b.43.3.2	63086
1pyoB	105	40.65		
2qdeA	397	42.63		
1pysA	350	47.67	d.104.1.1	40775
1qtnB	95	48.93		
2oc3A	303	49.25		
1ehsA	48	54.89	g.2.1.1	43998
2v89A	82	58.14		
3d1cA	369	65.82		
2ehpA	126	69.37		
1j7lA	264	69.82	d.144.1.6	62697
1vqoB	338	77.99	b.43.3.2	120363
2je6I	251	80.28		
1b13A	54	80.93	g.41.5.1	45227
1bq9A	54	82.55	g.41.5.1	45238
1iroA	54	83.98	g.41.5.1	45223
1nt4A	391	84.38	c.60.1.2	92102
1z1zA	131	84.64	d.323.1.1	124366
2yrvA	117	85.54		
2ovsA	118	87.02		
1htjF	210	88.45	a.91.1.1	61254