# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.1755 b.34.9.1 84964 1nmeB 92 4.581 2dkoB 103 5.694 1sc3B 88 6.550 1qtnB 95 7.640 1o59A 355 8.044 b.18.1.22,b.18.1.22 92495,92496 2oc3A 303 9.036 1khcA 147 11.07 b.34.9.2 68608 1d2eA 397 11.23 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1pysA 350 11.87 d.104.1.1 40775 1ehsA 48 13.34 g.2.1.1 43998 1jj2B 337 15.05 b.43.3.2 63086 1pdqA 72 15.18 b.34.13.2 94590 2qdeA 397 16.52 2j01E 206 22.13 1pyoB 105 23.24 2cm2A 304 23.88 c.45.1.2 130610 1c1dA 355 24.63 c.2.1.7,c.58.1.1 30270,33918 1uf5A 303 26.33 d.160.1.2 107808 1qstA 160 26.63 d.108.1.1 40804 2f71A 298 27.87 c.45.1.2 133070 1ym0B 27 32.91 2bkdN 134 33.72 1vqoB 338 35.52 b.43.3.2 120363 1xttA 216 35.55 c.61.1.1 122300 1d3yA 301 35.87 e.12.1.1 43252 2hqxA 246 36.68 b.34.9.1 136675 1g7fA 298 38.04 c.45.1.2 60330 1o0xA 262 41.83 d.127.1.1 80755 2qy1A 330 42.49 1t3lA 337 43.04 b.34.2.1,c.37.1.1 106358,106359 2qj8A 332 44.00 2r7dA 469 44.12 1i8dA 213 45.35 b.43.4.3,b.43.4.3 61953,61954 1kzlA 208 47.83 b.43.4.3,b.43.4.3 77635,77636 1yfnA 118 48.06 b.136.1.1 123080 1pa1A 310 50.75 c.45.1.2 94404 1w96A 554 51.34 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1ve0A 134 51.88 2ccvA 101 53.48 b.154.1.1 130258 2pbnA 313 53.69 1avqA 228 54.44 c.52.1.13 33326 1x8dA 104 54.53 1g4wR 383 57.25 a.24.11.1,c.45.1.2 16644,32692 2jepA 395 57.37 1ou8A 111 58.24 b.136.1.1 93543 2cxvA 219 59.51 b.47.1.4 131012 2dsxA 52 60.03 g.41.5.1 131699 1u7iA 136 60.04 d.32.1.7 107724 1dl2A 511 60.11 a.102.2.1 18844 2vcyA 344 60.29 1bq9A 54 61.12 g.41.5.1 45238 2q8kA 401 61.17 1igqA 62 61.72 b.34.1.3 66130 3cx5B 352 62.33 1abbA 828 63.44 c.87.1.4 35536 1tl2A 236 63.61 b.67.1.1 27541 2yrvA 117 64.44 1ptvA 321 69.11 c.45.1.2 32665 1rb9A 52 69.13 g.41.5.1 45214 2i75A 320 69.38 2i1yA 301 71.08 1iroA 54 71.23 g.41.5.1 45223 2qdxA 257 73.44 1erzA 303 74.78 d.160.1.2 59498 1wf7A 103 74.93 b.36.1.1 114577 1vc3B 97 76.09 2dyjA 95 79.66 2ivwA 113 79.79 1b13A 54 80.41 g.41.5.1 45227 2fp3A 316 80.80 3cwqA 209 80.97 2ar9A 278 81.12 1qxyA 252 81.18 d.127.1.1 96565 1iznB 277 82.28 e.43.1.2 83848 1vbvA 105 85.05 b.34.17.1 119965 1xxpA 306 86.55 c.45.1.2 122423 1pm4A 119 86.91 b.135.1.1 94891 1uv4A 293 89.47 b.67.2.1 119705