# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 7taa 478 1.364 1mhnA 59 1.407 b.34.9.1 84964 2sliA 679 2.528 b.29.1.9,b.68.1.1 24274,27611 2vhxA 377 5.451 2ac1A 541 6.342 1iqyA 638 7.342 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 2ffeA 311 8.354 c.143.1.1 133381 3c3dA 311 9.915 2r8jA 554 10.70 2b18A 164 11.19 1dl2A 511 11.54 a.102.2.1 18844 2d1cA 496 13.06 2hs8A 402 14.46 1p80A 753 14.61 c.23.16.3,e.5.1.1 94337,94338 2vcyA 344 15.20 1d3yA 301 16.07 e.12.1.1 43252 3c2uA 538 16.13 2hqxA 246 16.23 b.34.9.1 136675 1ush 550 16.32 1yuwA 554 17.47 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1cf9A 753 18.38 c.23.16.3,e.5.1.1 31441,42815 1wl9A 440 20.07 c.55.2.1,d.127.1.1 120998,120999 1xw2A 405 20.42 a.102.1.2 122389 1m7vA 363 20.66 d.174.1.1 78748 2id0A 644 21.09 2ebdA 309 21.20 1bheA 376 21.53 b.80.1.3 28030 1uylA 236 21.56 d.122.1.1 108147 2bwvA 440 21.78 c.55.2.1,d.127.1.1 129387,129388 1y1nA 291 23.99 2de6A 392 25.17 b.33.1.2,d.129.3.3 131415,131416 3bgaA 1010 25.26 1qtnB 95 25.47 2p4dA 172 26.30 1riiA 265 33.68 c.60.1.1 111807 3c86A 328 34.57 1vkdA 338 35.72 b.67.2.4 108644 1euvA 221 36.19 d.3.1.7 37133 2b9uA 176 36.57 1vh5A 148 36.81 d.38.1.5 100642 1b6aA 478 37.02 a.4.5.25,d.127.1.1 16223,41160 1hp1A 516 38.94 d.114.1.1,d.159.1.2 70976,70977 1imbA 277 39.37 e.7.1.1 42957 1nmeB 92 40.01 1wb0A 445 40.49 c.1.8.5,d.26.3.1 120825,120826 1aipA 405 40.69 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2afgA 140 41.01 b.42.1.1 25514 2rhsB 800 41.21 1k0rA 366 42.06 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1sc3B 88 46.22 1qtsA 247 46.73 b.1.10.1,d.105.1.1 22313,40789 1ppjA 446 47.92 d.185.1.1,d.185.1.1 104252,104253 1pdqA 72 48.22 b.34.13.2 94590 2hpkA 208 50.41 1xuvA 178 50.50 d.129.3.5 116069 2e5vA 472 50.72 2qy1A 330 51.27 1p57A 114 51.79 d.170.1.2 94125 2dt4A 143 51.97 2e58A 308 53.31 1erzA 303 53.90 d.160.1.2 59498 1tnsA 76 55.39 a.6.1.7 16228 3bs0A 439 56.06 1khcA 147 58.68 b.34.9.2 68608 1liiA 363 58.85 c.72.1.1 73921 1m7sA 484 60.02 e.5.1.1 74574 3bi1A 709 60.28 1l5aA 436 61.59 c.43.1.2,c.43.1.2 75923,75924 1u24A 337 61.92 c.45.1.4 112968 1rb9A 52 62.10 g.41.5.1 45214 2omf 340 63.62 2qdxA 257 63.82 2nt0A 497 64.97 b.71.1.2,c.1.8.3 138561,138562 1wxrA 1048 65.23 1hg8A 349 65.26 b.80.1.3 65830 1bg1A 722 65.48 a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 2cztA 167 65.65 2aysA 348 66.03 c.94.1.2 127570 1tl2A 236 66.17 b.67.1.1 27541 1smrA 335 66.63 b.50.1.2 26878 2z8lA 208 67.05 2p10A 286 67.11 1nofA 383 68.24 b.71.1.2,c.1.8.3 92020,92021 2evvA 207 68.62 1rc6A 261 69.24 b.82.1.11 97287 1q6hA 224 72.12 d.26.1.1 95975 1yifA 533 73.65 b.29.1.23,b.67.2.1 123283,123284 1i8dA 213 73.89 b.43.4.3,b.43.4.3 61953,61954 1uf5A 303 76.09 d.160.1.2 107808 2hr0A 645 77.78 1jj2B 337 78.52 b.43.3.2 63086 2ismA 352 78.77 1qycA 308 78.89 c.2.1.2 96581 1ehsA 48 79.20 g.2.1.1 43998 1dbhA 354 79.50 a.87.1.1,b.55.1.1 18514,26967 1a12A 413 82.05 b.69.5.1 27663 1f46A 140 83.47 d.129.4.1 59643 3d31C 295 85.58 1t3lA 337 85.81 b.34.2.1,c.37.1.1 106358,106359 2ghsA 326 85.96 b.68.6.1 135209 2jepA 395 86.04 2cm2A 304 86.35 c.45.1.2 130610 2q8kA 401 89.62