# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	0.4614	b.34.9.1	84964
1nmeB	92	4.807		
2dkoB	103	5.739		
1sc3B	88	6.071		
1ehsA	48	8.570	g.2.1.1	43998
1qtnB	95	9.443		
1o59A	355	10.73	b.18.1.22,b.18.1.22	92495,92496
2qdeA	397	10.82		
2fp3A	316	11.32		
1pyoB	105	19.05		
1m70A	190	22.56	a.3.1.4,a.3.1.4	91200,91201
2oc3A	303	22.60		
2ar9A	278	23.98		
1pysA	350	27.07	d.104.1.1	40775
1jj2B	337	31.81	b.43.3.2	63086
2j01E	206	34.97		
2jepA	395	36.90		
2cm2A	304	43.22	c.45.1.2	130610
1ym0B	27	44.61		
2bkdN	134	45.55		
2ccvA	101	49.53	b.154.1.1	130258
2f71A	298	51.56	c.45.1.2	133070
1t3lA	337	53.63	b.34.2.1,c.37.1.1	106358,106359
2q8kA	401	54.90		
1d2eA	397	55.54	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1z1zA	131	58.40	d.323.1.1	124366
1khcA	147	59.10	b.34.9.2	68608
2nx8A	179	59.58		
2hqxA	246	62.49	b.34.9.1	136675
1z3aA	168	63.34	c.97.1.2	124396
1pdqA	72	63.53	b.34.13.2	94590
1y60A	169	67.20	d.14.1.12	116489
3cx5B	352	67.60		
2dsxA	52	68.48	g.41.5.1	131699
1i8dA	213	69.00	b.43.4.3,b.43.4.3	61953,61954
2inpA	494	70.49		
1vqoB	338	70.73	b.43.3.2	120363
1abbA	828	71.64	c.87.1.4	35536
2cz8A	69	71.73		
1wijA	140	72.67	a.140.5.1	114674
2pceA	386	72.82		
1o0xA	262	73.29	d.127.1.1	80755
1dl2A	511	75.53	a.102.2.1	18844
1g7fA	298	76.97	c.45.1.2	60330
1iroA	54	77.02	g.41.5.1	45223
1xttA	216	77.05	c.61.1.1	122300
1rb9A	52	77.31	g.41.5.1	45214
1bq9A	54	79.31	g.41.5.1	45238
1m1qA	91	82.32	a.138.1.3	74419
1u7iA	136	85.80	d.32.1.7	107724
1b13A	54	86.16	g.41.5.1	45227
1bm4A	32	87.49	j.47.1.1	46325