# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	0.4026	b.34.9.1	84964
1sc3B	88	6.744		
1nmeB	92	7.802		
1ehsA	48	8.193	g.2.1.1	43998
2dkoB	103	9.115		
1qtnB	95	13.09		
2qdeA	397	14.18		
1o59A	355	21.33	b.18.1.22,b.18.1.22	92495,92496
2fp3A	316	28.57		
2j01E	206	28.91		
1pysA	350	29.06	d.104.1.1	40775
1xttA	216	31.55	c.61.1.1	122300
2oc3A	303	31.86		
1jj2B	337	33.27	b.43.3.2	63086
2yrvA	117	33.43		
2hqxA	246	34.20	b.34.9.1	136675
1pyoB	105	35.25		
2bkdN	134	36.44		
2jepA	395	37.14		
2ar9A	278	39.04		
1m70A	190	39.28	a.3.1.4,a.3.1.4	91200,91201
1khcA	147	45.89	b.34.9.2	68608
1avqA	228	50.84	c.52.1.13	33326
2ccvA	101	50.88	b.154.1.1	130258
1dlcA	584	51.12	b.18.1.3,b.77.2.1,f.1.3.1	23719,27976,43391
1ym0B	27	52.19		
1d3yA	301	53.20	e.12.1.1	43252
1d2eA	397	57.51	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1t3lA	337	59.38	b.34.2.1,c.37.1.1	106358,106359
1vqoB	338	64.12	b.43.3.2	120363
2pceA	386	68.15		
2ivwA	113	68.31		
2cm2A	304	70.59	c.45.1.2	130610
2qj8A	332	73.54		
2ovsA	118	76.74		
1c1dA	355	76.80	c.2.1.7,c.58.1.1	30270,33918
1ve0A	134	76.81		
1u7iA	136	77.22	d.32.1.7	107724
1abbA	828	82.70	c.87.1.4	35536
2r7dA	469	84.30		
2q8kA	401	86.37		
2pbnA	313	87.77