# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	0.4468	b.34.9.1	84964
1sc3B	88	5.537		
1nmeB	92	6.194		
2dkoB	103	7.688		
1qtnB	95	8.192		
1ehsA	48	9.265	g.2.1.1	43998
2qdeA	397	11.13		
2pbnA	313	16.25		
1pysA	350	22.38	d.104.1.1	40775
2oc3A	303	23.09		
2fp3A	316	23.96		
1pyoB	105	25.66		
2bkdN	134	25.70		
1t3lA	337	26.42	b.34.2.1,c.37.1.1	106358,106359
1khcA	147	31.34	b.34.9.2	68608
1avqA	228	31.75	c.52.1.13	33326
1jj2B	337	31.78	b.43.3.2	63086
1o59A	355	31.84	b.18.1.22,b.18.1.22	92495,92496
2ccvA	101	37.93	b.154.1.1	130258
2ar9A	278	38.78		
1ym0B	27	43.89		
2pceA	386	44.41		
1m70A	190	44.87	a.3.1.4,a.3.1.4	91200,91201
2i75A	320	51.43		
2cm2A	304	52.22	c.45.1.2	130610
2jepA	395	52.56		
1wchA	315	52.87	c.45.1.2	114508
1vqoB	338	56.38	b.43.3.2	120363
2vcyA	344	58.67		
2ivwA	113	59.24		
2yrvA	117	59.25		
1i8dA	213	60.46	b.43.4.3,b.43.4.3	61953,61954
1vc3B	97	63.70		
1m1qA	91	65.44	a.138.1.3	74419
2f71A	298	65.48	c.45.1.2	133070
1kzlA	208	65.99	b.43.4.3,b.43.4.3	77635,77636
2je6I	251	69.60		
2j01E	206	72.92		
2i1yA	301	75.35		
1d3yA	301	75.85	e.12.1.1	43252
2dsxA	52	80.00	g.41.5.1	131699
3bqkA	360	80.18		
1g7fA	298	81.49	c.45.1.2	60330
2r7dA	469	81.89		
1aoeA	192	83.52	c.71.1.1	34923
2q8kA	401	86.10		
1c1dA	355	86.44	c.2.1.7,c.58.1.1	30270,33918
2bwvA	440	87.27	c.55.2.1,d.127.1.1	129387,129388
1rb9A	52	88.46	g.41.5.1	45214
1w96A	554	88.90	b.84.2.1,c.30.1.1,d.142.1.2	114397,114398,114399
1mi8A	158	89.08	b.86.1.2	91279
2hqxA	246	89.62	b.34.9.1	136675