# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.848	b.34.9.1	84964
1m70A	190	2.215	a.3.1.4,a.3.1.4	91200,91201
2ar9A	278	2.369		
3b40A	417	5.414		
2fp3A	316	5.921		
1khcA	147	6.191	b.34.9.2	68608
2ra8A	362	7.038		
1jj2B	337	8.773	b.43.3.2	63086
2ppvA	332	13.67		
1vqoB	338	15.04	b.43.3.2	120363
1nmeB	92	15.31		
2yrvA	117	16.73		
2ovsA	118	17.77		
1ybdA	239	18.25	c.73.1.3	122884
2oq0A	206	18.27		
3cexA	172	27.30		
1jayA	212	28.07	c.2.1.6	66478
1qtnB	95	28.48		
1xuvA	178	29.14	d.129.3.5	116069
2qdeA	397	29.20		
1pm4A	119	31.72	b.135.1.1	94891
2dkoB	103	33.14		
1inp	400	34.29		
2bkdN	134	34.85		
2qsxA	218	36.87		
1tnsA	76	37.00	a.6.1.7	16228
1zi0A	307	37.70		
2pia	321	42.33		
2oc3A	303	43.21		
1wl8A	189	43.70	c.23.16.1	120997
1dl2A	511	44.37	a.102.2.1	18844
1aw9A	216	44.40	a.45.1.1,c.47.1.5	17736,33030
1uf5A	303	45.58	d.160.1.2	107808
1i1qB	192	45.88	c.23.16.1	61544
1nt4A	391	47.11	c.60.1.2	92102
2ogxB	270	48.92		
1d2eA	397	51.28	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1s3rA	535	51.93		
2in1A	175	53.78	d.20.1.4	137521
1n3jA	119	54.24	b.85.7.2	79963
2hqtA	124	55.51		
1dkzA	219	57.08	a.8.4.1,b.130.1.1	90345,90346
2jepA	395	57.29		
1pdqA	72	60.05	b.34.13.2	94590
2bneA	241	60.70	c.73.1.3	128824
1a64A	97	61.66	b.1.1.1	19750
1ok0A	74	61.80	b.5.1.1	93191
1pn2A	280	61.83	d.38.1.4,d.38.1.4	94930,94931
1pfoA	500	65.01	f.9.1.1	43826
1fhuA	320	65.11	c.1.11.2,d.54.1.1	29234,38878
2hqxA	246	66.68	b.34.9.1	136675
2b2yA	187	68.53	b.34.13.2,b.34.13.2	127754,127755
2ph7A	246	68.67		
1qxyA	252	69.04	d.127.1.1	96565
1aipA	405	72.74	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
2ccvA	101	73.99	b.154.1.1	130258
2jz5A	91	79.00		
1j6wA	175	80.26	d.185.1.2	62663
2aukA	190	81.11		
1zt7A	276	81.65		
1iroA	54	81.65	g.41.5.1	45223
1ak2A	233	82.66	c.37.1.1,g.41.2.1	31894,45195
1t6uA	117	85.01	a.24.22.1	106584
2ptfA	233	85.63		
2cxvA	219	85.97	b.47.1.4	131012
2v8hA	474	88.03		
1f75A	249	89.15	c.101.1.1	59662
1ohfA	644	89.42	b.121.4.8	93014