# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.607	b.34.9.1	84964
2ar9A	278	17.74		
2oc3A	303	19.05		
1aw9A	216	20.59	a.45.1.1,c.47.1.5	17736,33030
2p0pA	126	27.26		
1uf5A	303	29.97	d.160.1.2	107808
2fp3A	316	40.99		
2dkoB	103	42.03		
1jj2B	337	42.66	b.43.3.2	63086
1nmeB	92	45.08		
1khcA	147	50.74	b.34.9.2	68608
1hoe	74	51.51		
1ok0A	74	60.08	b.5.1.1	93191
1vqoB	338	62.99	b.43.3.2	120363
1erzA	303	66.84	d.160.1.2	59498
2vcyA	344	67.23		
1m70A	190	71.15	a.3.1.4,a.3.1.4	91200,91201
1eysL	280	71.26	f.26.1.1	43515
1tnsA	76	72.00	a.6.1.7	16228
2qdeA	397	72.32		
2i5nL	273	72.91	f.26.1.1	137066
2bkdN	134	74.06		
2ovsA	118	77.58		
1sc3B	88	85.30