This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 22 NATAA E A 2 23 NATAA T A 3 24 NATAA E A 4 25 NATAA L A 5 26 NATAA G A 6 27 NATAA L A 7 28 NATAA Y A 8 29 NATAA K A 9 30 NATAA V A 10 31 NATAA N A 11 32 NATAA E A 12 33 NATAA Y A 13 34 NATAA V A 14 35 NATAA D A 15 36 NATAA A A 16 37 NATAA R A 17 38 NATAA D A 18 39 NATAA T A 19 40 NATAA N A 20 41 NATAA M A 21 42 NATAA G A 22 43 NATAA A A 23 44 NATAA W A 24 45 NATAA F A 25 46 NATAA E A 26 47 NATAA A A 27 48 NATAA Q A 28 49 NATAA V A 29 50 NATAA V A 30 51 NATAA R A 31 52 NATAA V A 32 53 NATAA T A 33 54 NATAA R A 34 55 NATAA K A 35 56 NATAA A A 36 57 NATRO P A 37 58 NATAA S A 38 59 NATAA R A 39 60 NATAA D A 40 61 NATAA E A 41 62 NATRO P A 42 63 NATRO C A 43 64 NATAA S A 44 65 NATAA S A 45 66 NATAA T A 46 67 NATAA S A 47 68 NATAA R A 48 69 NATRO P A 49 70 NATAA A A 50 71 NATAA L A 51 72 NATAA E A 52 73 NATAA E A 53 74 NATAA D A 54 75 NATAA V A 55 76 NATAA I A 56 77 NATAA Y A 57 78 NATAA H A 58 79 NATAA V A 59 80 NATAA K A 60 81 NATAA Y A 61 82 NATAA D A 62 83 NATAA D A 63 84 NATAA Y A 64 85 NATRO P A 65 86 NATAA E A 66 87 NATAA N A 67 88 NATAA G A 68 89 NATAA V A 69 90 NATAA V A 70 91 NATAA Q A 71 92 NATAA M A 72 93 NATAA N A 73 94 NATAA S A 74 95 NATAA R A 75 96 NATAA D A 76 97 NATAA V A 77 98 NATAA R A 78 99 NATAA A A 79 100 NATAA R A 80 101 NATAA A