Best Alignments for TR389

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2oucA	1.3852e-16	2oucA/TR389-2oucA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qb0A	3.9750e-15	1qb0A/TR389-1qb0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
1gmxA	4.1997e-15	1gmxA/TR389-1gmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.3
1whbA	4.2846e-15	1whbA/TR389-1whbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.4
2j6pA	7.9730e-15	2j6pA/TR389-2j6pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gwfA	8.9476e-15	2gwfA/TR389-2gwfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.4
1e0cA	9.3220e-15	1e0cA/TR389-1e0cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1yt8A	1.0254e-14	1yt8A/TR389-1yt8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
2hhgA	1.4709e-14	2hhgA/TR389-2hhgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1t3kA	1.5187e-14	1t3kA/TR389-1t3kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
2a2kA	1.7531e-14	2a2kA/TR389-2a2kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rhs	5.0598e-14	1rhs/TR389-1rhs-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uarA	5.2138e-14	1uarA/TR389-1uarA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1rhsA	5.8500e-14	1rhsA/TR389-1rhsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1ymkA	6.9487e-14	1ymkA/TR389-1ymkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
2fsxA	1.4956e-13	2fsxA/TR389-2fsxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1okgA	3.3197e-12	1okgA/TR389-1okgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2 d.26.1.3
2eg4A	1.0852e-10	2eg4A/TR389-2eg4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wv9A	1.7295e-09	1wv9A/TR389-1wv9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1c25	2.4621e-07	1c25/TR389-1c25-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001