Best Alignments for TR389

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2oucA	1.9876e-16	2oucA/TR389-2oucA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1hzmA	2.8729e-14	1hzmA/TR389-1hzmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
1ymkA	1.0221e-12	1ymkA/TR389-1ymkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
2a2kA	1.2834e-12	2a2kA/TR389-2a2kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qb0A	1.8660e-11	1qb0A/TR389-1qb0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
1gmxA	2.4582e-11	1gmxA/TR389-1gmxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.3
1c25	4.0334e-11	1c25/TR389-1c25-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1t3kA	4.6475e-11	1t3kA/TR389-1t3kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
1yt8A	5.0681e-10	1yt8A/TR389-1yt8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
2fsxA	6.1768e-10	2fsxA/TR389-2fsxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j6pA	1.5889e-09	2j6pA/TR389-2j6pA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gwfA	1.8460e-09	2gwfA/TR389-2gwfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.4
2hhgA	3.2235e-09	2hhgA/TR389-2hhgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2eg4A	3.7859e-09	2eg4A/TR389-2eg4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rhsA	6.1860e-09	1rhsA/TR389-1rhsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1e0cA	7.5677e-09	1e0cA/TR389-1e0cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1whbA	1.3973e-08	1whbA/TR389-1whbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.4
1wv9A	7.0808e-08	1wv9A/TR389-1wv9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rhs	7.3500e-08	1rhs/TR389-1rhs-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uarA	1.3723e-07	1uarA/TR389-1uarA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001