# List of top-scoring protein chains for TR389.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	6.37e-13	c.46.1.1	65975
2oucA	142	2.93e-11		
1ymkA	175	1.03e-10	c.46.1.1	123699
1cwtA	178	1.03e-10	c.46.1.1	32702
1qb0A	211	1.06e-10	c.46.1.1	32699
2ifdA	175	1.19e-10		
2ifvA	175	1.96e-10		
1c25A	161	2.07e-10	c.46.1.1	32698
2a2kA	175	2.34e-10		
1e0cA	271	2.55e-06	c.46.1.2,c.46.1.2	32717,32718
1urhA	280	7.00e-06	c.46.1.2,c.46.1.2	99829,99830
1gmxA	108	7.90e-06	c.46.1.3	65355
1yt8A	539	5.33e-05	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1tq1A	129	7.70e-05	c.46.1.3	107198
1uarA	285	7.75e-05	c.46.1.2,c.46.1.2	107762,107763
1rhsA	296	9.68e-05	c.46.1.2,c.46.1.2	32703,32704
1dp2A	293	9.70e-05	c.46.1.2,c.46.1.2	32705,32706
1rhdA	293	0.000172	c.46.1.2,c.46.1.2	32715,32716
2eg4A	230	0.000257		
2hhgA	139	0.003090		
2k0zA	110	0.003521		
2j6pA	152	0.003914		
1t3kA	152	0.004251	c.46.1.1	106357
1whbA	157	0.005191	c.46.1.4	114639
2gwfA	157	0.006087	c.46.1.4	135802
1okgA	373	0.04343	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1wv9A	94	0.1054		
1qxnA	137	0.3501	c.46.1.3	96537
2fsxA	148	4.647		
1ns5A	155	21.34	c.116.1.3	80705
2zkrg	317	21.84		
1xl3C	92	22.51	a.243.1.1	122104
1veeA	134	24.11		
2yvtA	260	30.64		
1qqhA	144	45.71	b.91.1.1	28404
1mj1A	405	46.73	i.1.1.1	79175
3pcgA	200	55.75	b.3.6.1	22647
1tueB	218	63.04	b.91.1.1	107324
2af7A	125	67.82	a.152.1.2	126658
2ggfA	137	68.81		
2nszA	129	72.99	a.118.1.14	138560
2cyeA	133	74.97	d.38.1.1	131021
1n1tA	641	77.23	b.29.1.15,b.68.1.1	79821,79822
2agsA	652	78.47	b.29.1.15,b.68.1.1	126737,126738
2hm8A	136	80.64		
2iosA	150	82.97	a.118.1.14	137576
2ionA	152	83.52	a.118.1.14	137575
1kg0C	136	84.51	d.169.1.1	72445
1wcsA	641	84.52	b.29.1.15,b.68.1.1	114522,114523
1r76A	408	88.33	a.102.5.1	104830
2okgA	255	89.21