# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	2.91e-13		
1hzmA	154	8.57e-13	c.46.1.1	65975
2a2kA	175	3.38e-11		
1ymkA	175	1.17e-10	c.46.1.1	123699
1qb0A	211	2.44e-10	c.46.1.1	32699
1c25	161	3.01e-10		
1gmxA	108	9.08e-10	c.46.1.3	65355
1t3kA	152	1.76e-09	c.46.1.1	106357
1yt8A	539	3.94e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1e0cA	271	9.37e-09	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	1.32e-08		
2fsxA	148	1.86e-08		
2j6pA	152	1.91e-08		
2gwfA	157	9.17e-08	c.46.1.4	135802
1rhsA	296	1.16e-07	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	2.24e-07		
1uarA	285	3.29e-07	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	3.43e-07		
1whbA	157	1.27e-06	c.46.1.4	114639
1wv9A	94	4.22e-06		
1okgA	373	1.15e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2fcaA	213	7.892	c.66.1.53	133262
2rdmA	132	10.60		
1l6oA	95	19.57	b.36.1.1	84534
1vi1A	345	25.38	c.77.1.4	100724
1rxwA	336	25.56	a.60.7.1,c.120.1.2	98059,98060
1gxmA	332	27.50	a.102.5.1	76371
1kgsA	225	28.94	a.4.6.1,c.23.1.1	68596,68597
2cw6A	298	30.96		
1oc7A	364	32.80	c.6.1.1	86794
1aq0A	306	32.92	c.1.8.3	28842
2ggsA	273	34.01		
1bvwA	360	34.91	c.6.1.1	30668
1xel	338	37.29		
2bvwA	362	37.38	c.6.1.1	30666
1surA	215	40.54	c.26.2.2	31620
1f2dA	341	41.76	c.79.1.1	35298
2c31A	568	45.65	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
2plc	274	47.29		
2f02A	323	47.86	c.72.1.1	132649
2qtwA	124	48.75		
1hskA	326	49.17	d.145.1.2,d.146.1.1	61241,61242
1rkuA	206	49.57	c.108.1.11	97627
2gasA	307	50.12		
1n2sA	299	52.25	c.2.1.2	79857
1c3pA	375	55.76	c.42.1.2	32606
2ob9A	130	56.95		
1qjwA	365	57.07	c.6.1.1	30657
2c71A	216	57.39	c.6.2.3	130017
3cu5A	141	59.70		
1vjgA	218	60.31	c.23.10.6	100810
1a04A	215	62.23	a.4.6.2,c.23.1.1	16234,31089
1m7gA	211	64.13	c.37.1.4	78724
1ghsA	306	64.21	c.1.8.3	28840
1udcA	338	65.78	c.2.1.2	29785
2pidA	356	66.09		
1v93A	296	66.95	c.1.23.1	100532
1dysA	348	67.28	c.6.1.1	30669
1p77A	272	73.49	c.2.1.7,c.58.1.5	94214,94215
2b4uA	335	74.78		
1tlfA	301	79.76	c.93.1.1	35687
2a0nA	265	80.78	c.1.2.1	125961
1a76	326	82.96		
1h70A	255	84.67	d.126.1.3	60711
1cmiA	85	85.28	d.39.1.1	38551