# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	2.41e-13		
1hzmA	154	3.35e-13	c.46.1.1	65975
2a2kA	175	2.33e-11		
1ymkA	175	7.02e-11	c.46.1.1	123699
1qb0A	211	1.85e-10	c.46.1.1	32699
1c25	161	2.23e-10		
1gmxA	108	7.70e-10	c.46.1.3	65355
1t3kA	152	1.42e-09	c.46.1.1	106357
1yt8A	539	2.91e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1e0cA	271	8.60e-09	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	1.27e-08		
2hhgA	139	1.31e-08		
2j6pA	152	1.33e-08		
2gwfA	157	5.51e-08	c.46.1.4	135802
1rhsA	296	1.02e-07	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	1.03e-07	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	3.12e-07		
1rhs	296	3.31e-07		
1whbA	157	8.85e-07	c.46.1.4	114639
1wv9A	94	3.43e-06		
1okgA	373	2.07e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2rdmA	132	9.255		
2fcaA	213	9.570	c.66.1.53	133262
1l6oA	95	20.78	b.36.1.1	84534
1rxwA	336	23.68	a.60.7.1,c.120.1.2	98059,98060
2c31A	568	26.66	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1gxmA	332	29.06	a.102.5.1	76371
2qtwA	124	30.74		
1vi1A	345	32.45	c.77.1.4	100724
2ggsA	273	33.55		
1kgsA	225	34.42	a.4.6.1,c.23.1.1	68596,68597
1rkuA	206	45.96	c.108.1.11	97627
1aq0A	306	46.11	c.1.8.3	28842
1p77A	272	47.30	c.2.1.7,c.58.1.5	94214,94215
1n2sA	299	49.69	c.2.1.2	79857
2gasA	307	51.16		
1surA	215	56.04	c.26.2.2	31620
1oc7A	364	59.56	c.6.1.1	86794
2rjnA	154	59.99		
3cu5A	141	61.01		
1eziA	228	61.81	c.68.1.13	34512
1hskA	326	68.47	d.145.1.2,d.146.1.1	61241,61242
1dysA	348	69.82	c.6.1.1	30669
1gqvA	135	70.17	d.5.1.1	70376
2plc	274	70.55		
2pmwA	126	71.62		
2bvwA	362	74.29	c.6.1.1	30666
1bvwA	360	74.83	c.6.1.1	30668
1qj5A	429	76.89	c.67.1.4	34493
1xel	338	76.90		
2ob9A	130	78.04		
1pydA	556	80.93	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1l5zA	155	81.76	c.23.1.1	77722
1uyrA	737	82.28	c.14.1.4,c.14.1.4	100188,100189
1kcw	1046	85.48		
1h70A	255	85.97	d.126.1.3	60711
1s0aA	429	87.21	c.67.1.4	98263
1qjwA	365	88.65	c.6.1.1	30657