# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	9.77e-12		
1hzmA	154	6.25e-11	c.46.1.1	65975
2a2kA	175	1.41e-09		
1ymkA	175	3.11e-09	c.46.1.1	123699
1gmxA	108	5.56e-09	c.46.1.3	65355
1qb0A	211	6.87e-09	c.46.1.1	32699
1c25	161	8.16e-09		
1yt8A	539	2.69e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1t3kA	152	6.11e-08	c.46.1.1	106357
1e0cA	271	8.61e-08	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	1.20e-07		
2fsxA	148	1.92e-07		
2j6pA	152	2.46e-07		
1rhsA	296	3.75e-07	c.46.1.2,c.46.1.2	32703,32704
2gwfA	157	5.44e-07	c.46.1.4	135802
1uarA	285	8.31e-07	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	1.03e-06		
2eg4A	230	1.92e-06		
1whbA	157	4.68e-06	c.46.1.4	114639
1wv9A	94	1.11e-05		
1okgA	373	3.07e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2fcaA	213	5.266	c.66.1.53	133262
2rdmA	132	13.92		
1vi1A	345	18.48	c.77.1.4	100724
1gxmA	332	21.16	a.102.5.1	76371
2cw6A	298	23.57		
1eziA	228	28.31	c.68.1.13	34512
1rxwA	336	28.36	a.60.7.1,c.120.1.2	98059,98060
1pydA	556	30.65	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
2gasA	307	38.77		
1surA	215	38.91	c.26.2.2	31620
1xel	338	40.63		
2gt1A	326	41.14		
2qtwA	124	42.70		
1h70A	255	43.13	d.126.1.3	60711
1l6oA	95	44.94	b.36.1.1	84534
1rpnA	335	45.28	c.2.1.2	97708
2plc	274	45.32		
1p3dA	475	49.55	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2cxcA	144	50.16		
2c31A	568	51.10	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1n2sA	299	52.26	c.2.1.2	79857
1kgsA	225	52.87	a.4.6.1,c.23.1.1	68596,68597
2e85A	159	53.43		
1t64A	377	54.53	c.42.1.2	106543
1aq0A	306	54.74	c.1.8.3	28842
1ns5A	155	56.76	c.116.1.3	80705
1oc7A	364	58.13	c.6.1.1	86794
2higA	487	58.37		
1gqvA	135	60.55	d.5.1.1	70376
1wvfA	520	61.98	d.58.32.1,d.145.1.1	121337,121338
1a76	326	62.44		
2elcA	329	62.61		
3c1oA	321	62.97		
1kcw	1046	63.11		
1qjwA	365	66.11	c.6.1.1	30657
1rkuA	206	66.41	c.108.1.11	97627
1zz1A	369	71.57		
1u7nA	336	73.28	c.77.1.4	107726
1dysA	348	75.95	c.6.1.1	30669
1c3pA	375	78.07	c.42.1.2	32606
1udcA	338	79.47	c.2.1.2	29785
2pmwA	126	79.95		
2npnA	251	80.28		
2ob9A	130	81.46		
1vecA	206	81.95	c.37.1.19	100575
1ydnA	295	82.00		
1jj2M	186	82.20	c.55.4.1	63098
1yzhA	214	83.99	c.66.1.53	124277
2i4aA	107	84.38		
1at0A	145	85.19	b.86.1.1	28374
2ggsA	273	87.34		
1tlfA	301	89.71	c.93.1.1	35687