# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	2.89e-12		
1hzmA	154	4.81e-12	c.46.1.1	65975
2a2kA	175	4.30e-10		
1ymkA	175	8.93e-10	c.46.1.1	123699
1qb0A	211	2.76e-09	c.46.1.1	32699
1c25	161	3.52e-09		
1gmxA	108	6.11e-09	c.46.1.3	65355
1t3kA	152	1.89e-08	c.46.1.1	106357
1yt8A	539	2.60e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2fsxA	148	4.75e-08		
1e0cA	271	7.26e-08	c.46.1.2,c.46.1.2	32717,32718
2j6pA	152	7.82e-08		
2hhgA	139	1.30e-07		
1rhsA	296	5.37e-07	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	9.27e-07		
2gwfA	157	1.34e-06	c.46.1.4	135802
1uarA	285	1.60e-06	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	2.16e-06		
1whbA	157	1.33e-05	c.46.1.4	114639
1wv9A	94	2.06e-05		
1okgA	373	0.000113	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2rdmA	132	8.060		
1vi1A	345	14.21	c.77.1.4	100724
1l6oA	95	16.43	b.36.1.1	84534
2fcaA	213	17.54	c.66.1.53	133262
2qtwA	124	32.72		
1p3dA	475	37.72	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2ggsA	273	42.50		
2ob9A	130	47.76		
1c3pA	375	50.08	c.42.1.2	32606
1rxwA	336	50.20	a.60.7.1,c.120.1.2	98059,98060
1rkuA	206	55.76	c.108.1.11	97627
2plc	274	55.92		
1kgsA	225	58.15	a.4.6.1,c.23.1.1	68596,68597
1gxmA	332	59.47	a.102.5.1	76371
2cxcA	144	61.04		
2yzuA	109	62.48		
2i4aA	107	63.88		
1a04A	215	64.84	a.4.6.2,c.23.1.1	16234,31089
3cu5A	141	66.25		
1r45A	204	66.28	d.166.1.1	111683
1p77A	272	67.51	c.2.1.7,c.58.1.5	94214,94215
1aq0A	306	68.73	c.1.8.3	28842
2gh9A	386	69.48		
1bvwA	360	71.32	c.6.1.1	30668
1oc7A	364	71.77	c.6.1.1	86794
1xexB	172	77.28		
1xel	338	77.42		
1u7nA	336	80.77	c.77.1.4	107726
2cvkA	110	84.13		
1pydA	556	84.37	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
2bvwA	362	84.55	c.6.1.1	30666
1surA	215	85.31	c.26.2.2	31620
2rjnA	154	85.34		
1h70A	255	89.03	d.126.1.3	60711