# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oucA 142 1.94e-12 1hzmA 154 4.06e-12 c.46.1.1 65975 2a2kA 175 2.46e-10 1ymkA 175 5.62e-10 c.46.1.1 123699 1qb0A 211 1.69e-09 c.46.1.1 32699 1c25 161 2.34e-09 1gmxA 108 4.79e-09 c.46.1.3 65355 1t3kA 152 1.53e-08 c.46.1.1 106357 1yt8A 539 1.66e-08 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fsxA 148 4.03e-08 1e0cA 271 4.81e-08 c.46.1.2,c.46.1.2 32717,32718 2j6pA 152 5.03e-08 2hhgA 139 9.75e-08 1rhsA 296 3.97e-07 c.46.1.2,c.46.1.2 32703,32704 2eg4A 230 7.66e-07 2gwfA 157 8.21e-07 c.46.1.4 135802 1rhs 296 1.26e-06 1uarA 285 1.36e-06 c.46.1.2,c.46.1.2 107762,107763 1whbA 157 8.30e-06 c.46.1.4 114639 1wv9A 94 1.51e-05 1okgA 373 8.29e-05 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2rdmA 132 7.825 2fcaA 213 13.99 c.66.1.53 133262 1vi1A 345 14.15 c.77.1.4 100724 1l6oA 95 20.76 b.36.1.1 84534 1rxwA 336 36.07 a.60.7.1,c.120.1.2 98059,98060 2ggsA 273 38.04 2qtwA 124 38.17 1c3pA 375 38.33 c.42.1.2 32606 1p3dA 475 42.76 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1kgsA 225 47.16 a.4.6.1,c.23.1.1 68596,68597 2ob9A 130 48.36 1xel 338 49.39 1rkuA 206 52.07 c.108.1.11 97627 1a04A 215 56.68 a.4.6.2,c.23.1.1 16234,31089 1eziA 228 58.94 c.68.1.13 34512 1surA 215 59.00 c.26.2.2 31620 1r45A 204 60.29 d.166.1.1 111683 1pydA 556 60.85 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2c31A 568 64.99 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1oc7A 364 65.83 c.6.1.1 86794 1p77A 272 66.42 c.2.1.7,c.58.1.5 94214,94215 3cu5A 141 68.08 2rjnA 154 69.54 1bvwA 360 71.65 c.6.1.1 30668 1aq0A 306 71.79 c.1.8.3 28842 2cw6A 298 72.42 1u7nA 336 73.16 c.77.1.4 107726 2gasA 307 73.24 2plc 274 73.45 2gh9A 386 73.73 1gxmA 332 74.84 a.102.5.1 76371 2f02A 323 77.27 c.72.1.1 132649 1n2sA 299 78.26 c.2.1.2 79857 2cxcA 144 79.45 1t64A 377 83.81 c.42.1.2 106543 1gqvA 135 85.09 d.5.1.1 70376 2bvwA 362 85.60 c.6.1.1 30666 1udcA 338 85.78 c.2.1.2 29785