# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	1.86e-12		
1hzmA	154	3.13e-12	c.46.1.1	65975
2a2kA	175	2.63e-10		
1ymkA	175	6.26e-10	c.46.1.1	123699
1qb0A	211	1.75e-09	c.46.1.1	32699
1c25	161	2.45e-09		
1gmxA	108	5.06e-09	c.46.1.3	65355
1t3kA	152	1.20e-08	c.46.1.1	106357
1yt8A	539	1.85e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2fsxA	148	3.11e-08		
1e0cA	271	4.54e-08	c.46.1.2,c.46.1.2	32717,32718
2j6pA	152	5.77e-08		
2hhgA	139	9.60e-08		
1rhsA	296	5.15e-07	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	7.71e-07		
2gwfA	157	9.31e-07	c.46.1.4	135802
1uarA	285	1.29e-06	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	1.37e-06		
1whbA	157	7.14e-06	c.46.1.4	114639
1wv9A	94	1.44e-05		
1okgA	373	5.54e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2rdmA	132	6.588		
1vi1A	345	13.88	c.77.1.4	100724
2fcaA	213	16.83	c.66.1.53	133262
1l6oA	95	24.63	b.36.1.1	84534
1rxwA	336	28.16	a.60.7.1,c.120.1.2	98059,98060
2ggsA	273	32.73		
1c3pA	375	39.19	c.42.1.2	32606
2qtwA	124	40.74		
1rkuA	206	45.09	c.108.1.11	97627
2ob9A	130	48.30		
1a04A	215	51.55	a.4.6.2,c.23.1.1	16234,31089
1kgsA	225	51.99	a.4.6.1,c.23.1.1	68596,68597
1xel	338	52.04		
1surA	215	54.04	c.26.2.2	31620
1p3dA	475	55.35	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1oc7A	364	56.62	c.6.1.1	86794
2c31A	568	57.17	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1bvwA	360	58.19	c.6.1.1	30668
2plc	274	62.84		
2rjnA	154	63.39		
1gxmA	332	63.73	a.102.5.1	76371
2bvwA	362	66.43	c.6.1.1	30666
1p77A	272	70.81	c.2.1.7,c.58.1.5	94214,94215
1eziA	228	71.18	c.68.1.13	34512
3cu5A	141	73.88		
1aq0A	306	74.36	c.1.8.3	28842
1r45A	204	75.14	d.166.1.1	111683
1gqvA	135	75.37	d.5.1.1	70376
1t64A	377	76.75	c.42.1.2	106543
1n2sA	299	77.15	c.2.1.2	79857
1kcw	1046	81.18		
2f02A	323	82.27	c.72.1.1	132649
1u7nA	336	85.53	c.77.1.4	107726
1udcA	338	89.56	c.2.1.2	29785