# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	5.07e-14		
1hzmA	154	2.80e-13	c.46.1.1	65975
2a2kA	175	1.99e-11		
1ymkA	175	5.45e-11	c.46.1.1	123699
1qb0A	211	1.88e-10	c.46.1.1	32699
1c25	161	2.46e-10		
1gmxA	108	3.05e-10	c.46.1.3	65355
1t3kA	152	1.22e-09	c.46.1.1	106357
2hhgA	139	2.58e-09		
1yt8A	539	3.92e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2fsxA	148	5.62e-09		
2j6pA	152	6.12e-09		
2gwfA	157	8.80e-09	c.46.1.4	135802
1e0cA	271	1.07e-08	c.46.1.2,c.46.1.2	32717,32718
1whbA	157	1.07e-07	c.46.1.4	114639
1rhsA	296	1.11e-07	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	1.29e-07	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	2.01e-07		
1rhs	296	2.17e-07		
1wv9A	94	1.79e-06		
1okgA	373	5.66e-06	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1j0dA	341	13.16	c.79.1.1	83902
1vi1A	345	13.29	c.77.1.4	100724
1f2dA	341	15.89	c.79.1.1	35298
2fcaA	213	24.49	c.66.1.53	133262
1eziA	228	27.52	c.68.1.13	34512
2plc	274	30.46		
2ggsA	273	30.58		
1l5zA	155	30.64	c.23.1.1	77722
2c31A	568	30.76	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
2rdmA	132	36.72		
2e85A	159	40.67		
1wdpA	495	41.82	c.1.8.1	120907
1ns5A	155	43.01	c.116.1.3	80705
1xhfA	123	61.07	c.23.1.1	122003
1b1yA	500	61.22	c.1.8.1	28796
1kgsA	225	62.24	a.4.6.1,c.23.1.1	68596,68597
1byb	495	70.33		
3cwvA	369	70.53		
1v3hA	495	72.11	c.1.8.1	108303
1p3dA	475	76.01	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1q9uA	130	76.50	d.129.7.1	96314
1u7nA	336	76.73	c.77.1.4	107726
1jj2M	186	77.21	c.55.4.1	63098
1dbwA	126	83.40	c.23.1.1	31095
2cvzA	289	87.14	a.100.1.1,c.2.1.6	130890,130891
1qkkA	155	88.70	c.23.1.1	31104
1rkuA	206	88.71	c.108.1.11	97627