# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	5.39e-12		
1hzmA	154	7.80e-12	c.46.1.1	65975
2a2kA	175	6.53e-10		
1ymkA	175	1.61e-09	c.46.1.1	123699
1qb0A	211	4.11e-09	c.46.1.1	32699
1c25	161	5.50e-09		
1gmxA	108	6.97e-09	c.46.1.3	65355
1yt8A	539	2.16e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1t3kA	152	4.06e-08	c.46.1.1	106357
1e0cA	271	6.30e-08	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	6.53e-08		
2j6pA	152	9.64e-08		
2hhgA	139	1.72e-07		
1rhsA	296	3.67e-07	c.46.1.2,c.46.1.2	32703,32704
2gwfA	157	6.63e-07	c.46.1.4	135802
1rhs	296	1.40e-06		
2eg4A	230	1.77e-06		
1uarA	285	1.88e-06	c.46.1.2,c.46.1.2	107762,107763
1whbA	157	1.43e-05	c.46.1.4	114639
1wv9A	94	2.99e-05		
1okgA	373	5.92e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2rdmA	132	10.50		
1l6oA	95	14.32	b.36.1.1	84534
1rxwA	336	27.81	a.60.7.1,c.120.1.2	98059,98060
1eziA	228	29.06	c.68.1.13	34512
1vi1A	345	29.55	c.77.1.4	100724
1gxmA	332	34.21	a.102.5.1	76371
2fcaA	213	34.49	c.66.1.53	133262
2ob9A	130	38.80		
1t64A	377	41.99	c.42.1.2	106543
1c3pA	375	43.52	c.42.1.2	32606
2ggsA	273	47.00		
1ns5A	155	47.49	c.116.1.3	80705
1oc7A	364	48.10	c.6.1.1	86794
2qtwA	124	53.10		
2plc	274	54.33		
1kgsA	225	54.38	a.4.6.1,c.23.1.1	68596,68597
1qjwA	365	56.13	c.6.1.1	30657
1dysA	348	61.71	c.6.1.1	30669
2c31A	568	61.96	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1gqvA	135	62.85	d.5.1.1	70376
2gasA	307	66.33		
1aq0A	306	68.60	c.1.8.3	28842
1surA	215	68.80	c.26.2.2	31620
1bvwA	360	73.79	c.6.1.1	30668
2c71A	216	75.65	c.6.2.3	130017
1a04A	215	76.65	a.4.6.2,c.23.1.1	16234,31089
2bvwA	362	78.64	c.6.1.1	30666
1b2pA	119	79.89	b.78.1.1	27998
2yzuA	109	80.23		
1rkuA	206	81.29	c.108.1.11	97627
1f2dA	341	86.20	c.79.1.1	35298
1cmiA	85	88.98	d.39.1.1	38551