# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hzmA 154 6.93e-21 c.46.1.1 65975 2oucA 142 3.73e-19 2a2kA 175 8.41e-17 1ymkA 175 5.75e-15 c.46.1.1 123699 1qb0A 211 2.73e-14 c.46.1.1 32699 1c25 161 4.09e-14 1gmxA 108 1.22e-13 c.46.1.3 65355 1yt8A 539 6.03e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1t3kA 152 1.16e-12 c.46.1.1 106357 2fsxA 148 3.00e-12 1rhsA 296 5.06e-12 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 5.17e-12 c.46.1.2,c.46.1.2 32717,32718 2j6pA 152 7.71e-12 2hhgA 139 2.28e-11 2gwfA 157 8.00e-11 c.46.1.4 135802 1rhs 296 8.10e-11 1uarA 285 2.51e-10 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 6.31e-10 1whbA 157 2.13e-09 c.46.1.4 114639 1wv9A 94 3.31e-08 1okgA 373 5.14e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2fcaA 213 0.4412 c.66.1.53 133262 1zxmA 400 2.137 1qmeA 702 2.598 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1pl8A 356 3.901 b.35.1.2,c.2.1.1 94878,94879 1yx2A 365 4.761 1hskA 326 6.581 d.145.1.2,d.146.1.1 61241,61242 1rxwA 336 6.745 a.60.7.1,c.120.1.2 98059,98060 2ggsA 273 7.056 1kcw 1046 7.700 1ee9A 320 8.753 c.2.1.7,c.58.1.2 30288,33936 1p77A 272 10.39 c.2.1.7,c.58.1.5 94214,94215 2aumA 317 10.42 c.8.10.1,c.23.16.7 127330,127331 1kqzA 273 10.64 c.1.8.5 68844 1ordA 730 11.27 c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 2z1mA 345 11.49 1xwfA 431 11.85 c.2.1.4,c.23.12.3 122392,122393 3b79A 129 12.74 1c3pA 375 13.04 c.42.1.2 32606 1ns5A 155 14.33 c.116.1.3 80705 1l5zA 155 14.33 c.23.1.1 77722 2r7dA 469 15.72 2rjnA 154 16.59 1l6oA 95 17.28 b.36.1.1 84534 2nteA 210 17.54 2qtwA 124 18.15 2pnfA 248 18.41 1zu4A 320 19.30 2c5uA 375 19.59 2ob9A 130 20.25 2akaB 299 22.55 c.37.1.8 126914 1eziA 228 23.23 c.68.1.13 34512 1rpnA 335 23.55 c.2.1.2 97708 1adjA 421 26.69 c.51.1.1,d.104.1.1 33188,40737 1wcqA 601 28.58 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 1yioA 208 29.01 a.4.6.2,c.23.1.1 123326,123327 1udcA 338 30.97 c.2.1.2 29785 1qkkA 155 31.22 c.23.1.1 31104 1w9pA 433 31.97 c.1.8.5,d.26.3.1 114412,114413 2cfuA 658 33.79 2pmwA 126 36.72 1a04A 215 36.97 a.4.6.2,c.23.1.1 16234,31089 1arv 344 37.16 1h70A 255 38.76 d.126.1.3 60711 3c1oA 321 39.06 2d3qA 442 39.82 d.58.4.14 131214 2bfgA 503 40.02 b.71.1.2,c.1.8.3 128423,128424 2q3mA 326 40.56 c.37.1.5 139795 2oqzA 223 41.52 b.100.1.1 139255 1zl0A 311 42.03 c.8.10.1,c.23.16.7 125231,125232 1lv7A 257 42.89 c.37.1.20 78232 1gt91 357 43.92 2z3hA 130 44.30 2gasA 307 45.29 2bf6A 449 45.74 1q0qA 406 48.87 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1ydnA 295 49.79 2epgA 487 51.74 1byb 495 51.97 1glaG 501 52.26 c.55.1.4,c.55.1.4 33507,33508 2nxfA 322 54.52 2hxvA 360 56.18 c.71.1.2,c.97.1.2 136859,136860 1v3hA 495 57.27 c.1.8.1 108303 2r6fA 972 57.34 1gw1A 376 59.32 c.1.8.3 76361 1pguA 615 60.09 b.69.4.1,b.69.4.1 88069,88070 2npnA 251 61.61 2veoA 441 62.11 1surA 215 62.19 c.26.2.2 31620 1wbsA 360 64.02 d.144.1.7 120860 2ixtA 310 66.28 1dgmA 363 66.92 c.72.1.1 34936 2gn4A 344 67.76 2uubK 129 68.22 c.55.4.1 139942 1dz4A 414 68.44 a.104.1.1 18903 1wdpA 495 69.23 c.1.8.1 120907 1xviA 275 69.70 c.108.1.10 116088 3cu5A 141 70.65 1aq0A 306 71.15 c.1.8.3 28842 1cqeA 580 77.59 a.93.1.2,g.3.11.1 18703,44246 1vjgA 218 78.14 c.23.10.6 100810 1q6aA 107 78.24 a.186.1.1 95966 2c71A 216 79.03 c.6.2.3 130017 1gxjA 186 80.78 d.215.1.1 70707 1ghsA 306 81.29 c.1.8.3 28840 1tlfA 301 81.55 c.93.1.1 35687 1onxA 390 81.80 b.92.1.7,c.1.9.13 87176,87177 1f8mA 429 82.24 c.1.12.7 29315 1xhfA 123 82.63 c.23.1.1 122003 2ys3A 137 83.61 1ush 550 83.61 1gqvA 135 84.35 d.5.1.1 70376 1j0aA 325 87.13 c.79.1.1 83871 1aru 344 87.64 1kcwA 1046 89.02 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1f52A 468 89.46 d.15.9.1,d.128.1.1 37839,41169