# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	3.94e-12		
1hzmA	154	4.55e-12	c.46.1.1	65975
2a2kA	175	3.53e-10		
1ymkA	175	9.30e-10	c.46.1.1	123699
1qb0A	211	2.31e-09	c.46.1.1	32699
1c25	161	3.05e-09		
1gmxA	108	6.10e-09	c.46.1.3	65355
1yt8A	539	1.86e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1t3kA	152	2.55e-08	c.46.1.1	106357
2fsxA	148	5.02e-08		
1e0cA	271	5.11e-08	c.46.1.2,c.46.1.2	32717,32718
2j6pA	152	8.41e-08		
2hhgA	139	1.56e-07		
1rhsA	296	2.55e-07	c.46.1.2,c.46.1.2	32703,32704
2gwfA	157	5.06e-07	c.46.1.4	135802
1rhs	296	1.13e-06		
1uarA	285	1.69e-06	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	1.82e-06		
1whbA	157	1.21e-05	c.46.1.4	114639
1wv9A	94	2.36e-05		
1okgA	373	5.43e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2rdmA	132	8.386		
1l6oA	95	18.71	b.36.1.1	84534
1eziA	228	26.88	c.68.1.13	34512
1gxmA	332	27.43	a.102.5.1	76371
1rxwA	336	29.34	a.60.7.1,c.120.1.2	98059,98060
1vi1A	345	30.80	c.77.1.4	100724
2qtwA	124	32.94		
2ggsA	273	36.93		
1c3pA	375	40.47	c.42.1.2	32606
2ob9A	130	40.82		
1kgsA	225	40.83	a.4.6.1,c.23.1.1	68596,68597
2fcaA	213	47.07	c.66.1.53	133262
1ns5A	155	47.20	c.116.1.3	80705
2pmwA	126	51.24		
2plc	274	51.52		
1oc7A	364	53.59	c.6.1.1	86794
1t64A	377	54.17	c.42.1.2	106543
2gasA	307	56.84		
2c31A	568	57.89	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1a04A	215	61.82	a.4.6.2,c.23.1.1	16234,31089
1qjwA	365	68.05	c.6.1.1	30657
1dysA	348	68.84	c.6.1.1	30669
1gqvA	135	69.77	d.5.1.1	70376
1bvwA	360	74.18	c.6.1.1	30668
1f2dA	341	74.32	c.79.1.1	35298
2bvwA	362	76.96	c.6.1.1	30666
1aq0A	306	78.62	c.1.8.3	28842
2c71A	216	81.35	c.6.2.3	130017
1surA	215	81.48	c.26.2.2	31620
2rjnA	154	82.09