# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	4.85e-14	c.46.1.1	65975
2oucA	142	8.57e-14		
2a2kA	175	1.33e-11		
1ymkA	175	3.18e-11	c.46.1.1	123699
1qb0A	211	1.07e-10	c.46.1.1	32699
1c25	161	1.62e-10		
1gmxA	108	3.80e-10	c.46.1.3	65355
1t3kA	152	5.79e-10	c.46.1.1	106357
1yt8A	539	2.05e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2fsxA	148	3.47e-09		
2j6pA	152	4.45e-09		
1e0cA	271	4.98e-09	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	1.37e-08		
1rhsA	296	3.23e-08	c.46.1.2,c.46.1.2	32703,32704
2gwfA	157	9.10e-08	c.46.1.4	135802
1uarA	285	1.11e-07	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	1.15e-07		
1rhs	296	2.82e-07		
1whbA	157	1.31e-06	c.46.1.4	114639
1wv9A	94	1.68e-06		
1okgA	373	1.35e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2rdmA	132	13.29		
2fcaA	213	14.06	c.66.1.53	133262
1l6oA	95	17.96	b.36.1.1	84534
1vi1A	345	21.89	c.77.1.4	100724
1gxmA	332	23.27	a.102.5.1	76371
2c31A	568	24.83	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1rxwA	336	32.46	a.60.7.1,c.120.1.2	98059,98060
1gqvA	135	33.98	d.5.1.1	70376
2qtwA	124	45.43		
1eziA	228	49.09	c.68.1.13	34512
2ggsA	273	49.73		
1f2dA	341	49.82	c.79.1.1	35298
1c3pA	375	51.37	c.42.1.2	32606
2gasA	307	53.13		
1kgsA	225	64.42	a.4.6.1,c.23.1.1	68596,68597
1rkuA	206	72.84	c.108.1.11	97627
1t64A	377	76.63	c.42.1.2	106543
1pydA	556	76.96	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1n2sA	299	77.76	c.2.1.2	79857
1r45A	204	80.68	d.166.1.1	111683
1aq0A	306	83.18	c.1.8.3	28842
1surA	215	83.91	c.26.2.2	31620
2ffwA	78	85.22		
2ob9A	130	86.06		
1kcw	1046	87.36		
2pmwA	126	89.76