# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	2.15e-12		
1hzmA	154	4.69e-12	c.46.1.1	65975
2a2kA	175	2.39e-10		
1ymkA	175	5.53e-10	c.46.1.1	123699
1qb0A	211	1.58e-09	c.46.1.1	32699
1c25	161	2.68e-09		
1gmxA	108	4.03e-09	c.46.1.3	65355
1t3kA	152	1.04e-08	c.46.1.1	106357
1yt8A	539	1.67e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2fsxA	148	4.05e-08		
2j6pA	152	4.74e-08		
1e0cA	271	6.05e-08	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	8.49e-08		
1rhsA	296	1.28e-07	c.46.1.2,c.46.1.2	32703,32704
2gwfA	157	4.49e-07	c.46.1.4	135802
1uarA	285	9.07e-07	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	1.04e-06		
1rhs	296	1.17e-06		
1whbA	157	3.27e-06	c.46.1.4	114639
1wv9A	94	7.16e-06		
1okgA	373	3.48e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1vi1A	345	14.00	c.77.1.4	100724
1gxmA	332	15.30	a.102.5.1	76371
2rdmA	132	16.62		
2fcaA	213	24.34	c.66.1.53	133262
1l6oA	95	25.81	b.36.1.1	84534
1eziA	228	29.31	c.68.1.13	34512
2c31A	568	37.88	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1gqvA	135	39.33	d.5.1.1	70376
1rxwA	336	42.88	a.60.7.1,c.120.1.2	98059,98060
1xel	338	44.01		
2gasA	307	47.33		
2qtwA	124	51.18		
1oc7A	364	51.65	c.6.1.1	86794
2ggsA	273	52.42		
2ob9A	130	56.14		
1kcw	1046	56.94		
1surA	215	59.99	c.26.2.2	31620
1n2sA	299	67.70	c.2.1.2	79857
2plc	274	68.73		
1rkuA	206	69.01	c.108.1.11	97627
1qjwA	365	73.94	c.6.1.1	30657
1dysA	348	74.09	c.6.1.1	30669
1pydA	556	76.24	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1aq0A	306	76.75	c.1.8.3	28842
1u7nA	336	81.09	c.77.1.4	107726
1f2dA	341	83.80	c.79.1.1	35298
2bvwA	362	87.04	c.6.1.1	30666
1bvwA	360	88.36	c.6.1.1	30668
2epgA	487	89.75