# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	2.03e-12		
1hzmA	154	5.20e-12	c.46.1.1	65975
2a2kA	175	1.35e-10		
1ymkA	175	2.94e-10	c.46.1.1	123699
1qb0A	211	8.85e-10	c.46.1.1	32699
1c25	161	1.61e-09		
1gmxA	108	3.04e-09	c.46.1.3	65355
1t3kA	152	8.29e-09	c.46.1.1	106357
1yt8A	539	1.27e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1e0cA	271	3.30e-08	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	3.33e-08		
2j6pA	152	4.42e-08		
2hhgA	139	4.97e-08		
1rhsA	296	2.25e-07	c.46.1.2,c.46.1.2	32703,32704
2gwfA	157	2.61e-07	c.46.1.4	135802
1uarA	285	4.10e-07	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	7.22e-07		
1rhs	296	1.01e-06		
1wv9A	94	3.98e-06		
1whbA	157	4.09e-06	c.46.1.4	114639
1okgA	373	4.06e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1vi1A	345	15.12	c.77.1.4	100724
2rdmA	132	20.18		
1l6oA	95	22.69	b.36.1.1	84534
1rxwA	336	28.70	a.60.7.1,c.120.1.2	98059,98060
2fcaA	213	29.95	c.66.1.53	133262
2ggsA	273	38.17		
2gasA	307	40.10		
2qtwA	124	42.69		
2c31A	568	46.58	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1gxmA	332	49.42	a.102.5.1	76371
1rkuA	206	54.85	c.108.1.11	97627
2plc	274	57.08		
1gqvA	135	57.14	d.5.1.1	70376
2ob9A	130	57.63		
1kcw	1046	62.83		
1xel	338	63.40		
1vecA	206	63.92	c.37.1.19	100575
1n2sA	299	65.20	c.2.1.2	79857
1oc7A	364	66.10	c.6.1.1	86794
1c3pA	375	66.11	c.42.1.2	32606
1f2dA	341	67.78	c.79.1.1	35298
1aq0A	306	72.60	c.1.8.3	28842
1surA	215	72.83	c.26.2.2	31620
1bvwA	360	72.98	c.6.1.1	30668
1u7nA	336	83.58	c.77.1.4	107726
3c1oA	321	84.89		
1hskA	326	85.05	d.145.1.2,d.146.1.1	61241,61242
1pydA	556	85.67	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1qjwA	365	88.18	c.6.1.1	30657
2bvwA	362	89.62	c.6.1.1	30666
2pmwA	126	89.89