# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	8.10e-14		
1hzmA	154	5.65e-13	c.46.1.1	65975
2a2kA	175	2.91e-11		
1ymkA	175	1.19e-10	c.46.1.1	123699
1c25	161	2.86e-10		
1qb0A	211	4.09e-10	c.46.1.1	32699
1gmxA	108	5.59e-10	c.46.1.3	65355
1t3kA	152	2.35e-09	c.46.1.1	106357
2fsxA	148	3.06e-09		
2gwfA	157	3.12e-09	c.46.1.4	135802
1yt8A	539	4.81e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2hhgA	139	6.29e-09		
1whbA	157	3.24e-08	c.46.1.4	114639
1e0cA	271	4.70e-08	c.46.1.2,c.46.1.2	32717,32718
2j6pA	152	5.13e-08		
1uarA	285	4.69e-07	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	7.05e-07		
1rhs	296	2.81e-06		
1rhsA	296	3.28e-06	c.46.1.2,c.46.1.2	32703,32704
1wv9A	94	9.28e-06		
1okgA	373	5.89e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2plc	274	5.876		
1f2dA	341	8.627	c.79.1.1	35298
1j0dA	341	9.635	c.79.1.1	83902
2gt1A	326	11.28		
2rdmA	132	15.69		
2fcaA	213	16.81	c.66.1.53	133262
1u0sY	118	37.46	c.23.1.1	107566
1xel	338	42.11		
2q7sA	290	45.48		
2i8lA	156	46.53		
2plcA	274	51.83	c.1.18.2	29614
1kgsA	225	54.64	a.4.6.1,c.23.1.1	68596,68597
1ns5A	155	60.07	c.116.1.3	80705
3cwvA	369	63.63		
2npnA	251	65.64		
2a9oA	120	67.23	c.23.1.1	126444
1dc7A	124	67.43	c.23.1.1	31093
1xhfA	123	69.24	c.23.1.1	122003
1vi1A	345	69.93	c.77.1.4	100724
1zodA	433	70.33	c.67.1.4	125437
2e85A	159	70.37		
2q7aA	152	72.82		
1z7gA	217	73.63	c.61.1.1	124624
1zsqA	528	75.80	b.55.1.8,c.45.1.3	125616,125617
2au5A	139	76.76	a.244.1.1	127322
1qj5A	429	79.42	c.67.1.4	34493
1l6oA	95	79.77	b.36.1.1	84534
1udcA	338	85.36	c.2.1.2	29785