# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	6.57e-14		
1hzmA	154	6.96e-14	c.46.1.1	65975
2a2kA	175	2.06e-11		
1ymkA	175	1.47e-10	c.46.1.1	123699
1qb0A	211	2.51e-10	c.46.1.1	32699
1c25	161	3.17e-10		
1t3kA	152	6.09e-10	c.46.1.1	106357
1gmxA	108	8.77e-10	c.46.1.3	65355
1yt8A	539	3.46e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2hhgA	139	1.04e-08		
1e0cA	271	1.27e-08	c.46.1.2,c.46.1.2	32717,32718
2j6pA	152	1.52e-08		
2fsxA	148	1.75e-08		
2gwfA	157	2.37e-08	c.46.1.4	135802
1uarA	285	1.21e-07	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	1.29e-07		
1whbA	157	1.46e-07	c.46.1.4	114639
1rhs	296	1.81e-07		
1rhsA	296	2.77e-07	c.46.1.2,c.46.1.2	32703,32704
1wv9A	94	5.01e-06		
1okgA	373	5.20e-06	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2plc	274	8.642		
2rdmA	132	20.45		
1f2dA	341	22.29	c.79.1.1	35298
1qj5A	429	26.16	c.67.1.4	34493
1dtyA	429	26.25	c.67.1.4	34495
1surA	215	27.99	c.26.2.2	31620
2fcaA	213	32.95	c.66.1.53	133262
1s0aA	429	34.75	c.67.1.4	98263
1j0dA	341	37.61	c.79.1.1	83902
2elfA	370	43.36		
1zodA	433	54.42	c.67.1.4	125437
1pydA	556	54.84	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1p3dA	475	57.60	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1sluA	142	59.12	b.16.1.1	23685
1rkuA	206	60.38	c.108.1.11	97627
1rxwA	336	62.36	a.60.7.1,c.120.1.2	98059,98060
2plcA	274	64.75	c.1.18.2	29614
2ggsA	273	71.50		
2gt1A	326	73.88		
1eziA	228	74.80	c.68.1.13	34512
2q7sA	290	75.76		
1l5zA	155	76.55	c.23.1.1	77722
2rjnA	154	84.08		
1vjgA	218	85.90	c.23.10.6	100810
1aq0A	306	86.57	c.1.8.3	28842