# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oucA 142 2.76e-12 2gwfA 157 5.74e-10 c.46.1.4 135802 2hhgA 139 5.96e-10 2a2kA 175 8.91e-10 1ymkA 175 9.03e-10 c.46.1.1 123699 1qb0A 211 1.98e-09 c.46.1.1 32699 1whbA 157 2.27e-09 c.46.1.4 114639 1gmxA 108 2.48e-09 c.46.1.3 65355 1c25 161 3.92e-09 1hzmA 154 2.81e-08 c.46.1.1 65975 1yt8A 539 8.25e-08 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2j6pA 152 2.24e-07 1uarA 285 1.17e-06 c.46.1.2,c.46.1.2 107762,107763 1e0cA 271 3.53e-06 c.46.1.2,c.46.1.2 32717,32718 1t3kA 152 5.32e-06 c.46.1.1 106357 1rhs 296 2.51e-05 1rhsA 296 0.000160 c.46.1.2,c.46.1.2 32703,32704 2fsxA 148 0.000165 2eg4A 230 0.001062 1wv9A 94 0.002673 1okgA 373 0.003945 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1khhA 198 3.070 c.66.1.16 68615 1lsuA 147 3.636 c.2.1.9 74250 2cw6A 298 7.205 1qgvA 142 7.933 c.47.1.8 33056 1lssA 140 8.002 c.2.1.9 74246 2d4qA 257 9.680 1zsqA 528 11.10 b.55.1.8,c.45.1.3 125616,125617 2hmvA 144 12.46 c.2.1.9 136615 1xcbA 211 13.24 a.4.5.38,c.2.1.12 109552,109553 2es7A 142 17.36 c.47.1.20 132314 2ggtA 164 18.02 c.47.1.10 135156 1bjnA 360 19.58 c.67.1.4 34469 2h3hA 313 21.29 1sdoA 203 21.83 c.52.1.21 98809 2ehjA 208 22.10 3bilA 348 22.21 1lw3A 657 23.60 b.55.1.8,c.45.1.3 91152,91153 1tjyA 316 24.18 c.93.1.1 107062 1s7zA 117 24.36 a.159.3.1 98715 1h1nA 305 24.82 c.1.8.3 70855 1jyeA 349 25.78 c.93.1.1 67455 1byrA 155 26.00 d.136.1.1 41450 1hskA 326 26.59 d.145.1.2,d.146.1.1 61241,61242 2e55A 208 27.44 1qxhA 167 30.66 c.47.1.10 96528 2c4nA 250 33.87 c.108.1.14 129837 1gqeA 365 36.18 e.38.1.1 70351 1zd8A 227 36.87 2fepA 289 41.21 1ydnA 295 42.29 2qvcA 313 42.30 2bvwA 362 44.65 c.6.1.1 30666 1jscA 630 46.66 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 1tlfA 301 46.83 c.93.1.1 35687 2egxA 269 49.91 2rjoA 332 50.37 1j7jA 178 50.73 c.61.1.1 84131 2dt5A 211 52.76 a.4.5.38,c.2.1.12 131708,131709 2cvbA 188 53.24 c.47.1.10 130859 1vpvA 300 53.88 c.119.1.1 113975 1zy9A 564 54.58 b.30.5.11,c.1.8.13 125813,125814 1q98A 165 55.16 c.47.1.10 96253 1jj2M 186 55.62 c.55.4.1 63098 1whsB 153 55.62 1k7jA 206 56.52 d.115.1.1 72103 1kk9A 221 57.21 d.115.1.1 77432 1v9sA 208 58.45 c.61.1.1 119894 1xclA 235 59.65 c.66.1.16 115127 2ejaA 338 60.42 1bcsB 160 60.48 1qjwA 365 63.49 c.6.1.1 30657 2aa4A 289 65.28 c.55.1.10,c.55.1.10 126465,126466 1efvA 315 65.43 c.26.2.3,c.31.1.2 31633,31728 2ia4A 287 65.46 1mgpA 313 65.82 c.119.1.1 79098 2abwA 227 68.23 c.23.16.1 126535 2px2A 269 68.45 1p1cA 199 70.80 c.66.1.16 87669 3bptA 363 70.82 1erw 105 71.23 1qpsA 261 72.38 c.52.1.1 33234 1f2vA 219 72.90 c.23.17.1 59627 1t9bA 677 74.60 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1bvwA 360 75.29 c.6.1.1 30668 2p65A 187 76.35 1kssA 571 77.30 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1nnlA 225 77.59 c.108.1.4 85906 1vddA 228 78.32 e.49.1.1 108519 1sc6A 404 78.67 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1gsjA 258 78.90 c.73.1.2 70397 1iu9A 111 79.13 c.78.2.1 90694 1pbtA 244 79.18 c.124.1.1 94416 1oc7A 364 81.11 c.6.1.1 86794 1rsgA 516 81.30 1oaoA 674 81.67 e.26.1.2 86744 1ltqA 301 83.42 c.108.1.9,c.37.1.1 78208,78209 1rcqA 357 83.66 b.49.2.2,c.1.6.1 104882,104883 1qcxA 359 83.84 b.80.1.2 28028 1f7lA 121 86.76 d.150.1.2 59666 1m64A 571 87.73 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 2p4hX 322 89.48 2av4A 162 89.73