# List of top-scoring protein chains for TR389.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1urhA 280 9.68e-14 c.46.1.2,c.46.1.2 99829,99830 1uarA 285 1.09e-12 c.46.1.2,c.46.1.2 107762,107763 2ifdA 175 8.56e-12 1qb0A 211 9.69e-12 c.46.1.1 32699 1cwtA 178 9.71e-12 c.46.1.1 32702 1ymkA 175 9.73e-12 c.46.1.1 123699 1c25A 161 1.43e-11 c.46.1.1 32698 2ifvA 175 2.15e-11 2a2kA 175 4.76e-11 1e0cA 271 6.51e-11 c.46.1.2,c.46.1.2 32717,32718 1rhdA 293 7.49e-11 c.46.1.2,c.46.1.2 32715,32716 1rhsA 296 8.82e-11 c.46.1.2,c.46.1.2 32703,32704 1dp2A 293 8.84e-11 c.46.1.2,c.46.1.2 32705,32706 1hzmA 154 4.15e-10 c.46.1.1 65975 1gmxA 108 2.39e-09 c.46.1.3 65355 2hhgA 139 8.70e-09 2eg4A 230 1.04e-08 2oucA 142 3.70e-08 1tq1A 129 6.40e-08 c.46.1.3 107198 1yt8A 539 2.33e-07 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1qxnA 137 3.23e-07 c.46.1.3 96537 2k0zA 110 4.44e-07 1okgA 373 8.06e-07 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2gwfA 157 1.43e-06 c.46.1.4 135802 1whbA 157 1.51e-06 c.46.1.4 114639 1t3kA 152 3.72e-06 c.46.1.1 106357 2j6pA 152 1.36e-05 2fsxA 148 0.000575 1wv9A 94 0.002629 1veeA 134 0.1888 2cyeA 133 6.161 d.38.1.1 131021 2yvtA 260 16.87 1xl3C 92 22.24 a.243.1.1 122104 1r4mB 431 26.29 c.111.1.2 97000 1tt5B 434 26.66 c.111.1.2 107292 3b9jC 763 30.40 1rzfH 235 32.71 b.1.1.1,b.1.1.2 98150,98151 1yovB 444 33.54 c.111.1.2 123786 1x31B 404 37.61 2nvuB 805 39.20 c.111.1.2,c.94.1.1 138661,138662 1ekjA 221 42.00 c.53.2.1 33364 1eo8H 217 46.18 b.1.1.1,b.1.1.2 20295,21287 2e3tA 1331 47.45 1wygA 1331 48.14 2e1qA 1333 49.60 1v97A 1332 57.19 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1n5xA 1331 57.21 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 85342,85343,85344,85345,85346,85347 2ckjA 1333 59.36 2cgrH 214 86.23 b.1.1.1,b.1.1.2 19919,21013 1ynlH 219 87.01 1aw2A 256 88.05 c.1.1.1 28523 1mj1A 405 88.63 i.1.1.1 79175 1ynkH 219 89.02 1npyA 271 89.80 c.2.1.7,c.58.1.5 85995,85996