# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 1.09e-13 c.46.1.4 114639 1e0cA 271 1.23e-13 c.46.1.2,c.46.1.2 32717,32718 2gwfA 157 1.66e-13 c.46.1.4 135802 2hhgA 139 4.20e-13 1qb0A 211 4.59e-13 c.46.1.1 32699 2oucA 142 1.21e-12 1rhs 296 2.76e-12 1gmxA 108 3.88e-12 c.46.1.3 65355 2a2kA 175 6.92e-12 2j6pA 152 7.03e-12 1yt8A 539 7.84e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 1.05e-11 c.46.1.2,c.46.1.2 107762,107763 1t3kA 152 1.42e-11 c.46.1.1 106357 1rhsA 296 1.68e-11 c.46.1.2,c.46.1.2 32703,32704 2fsxA 148 3.57e-11 1ymkA 175 1.06e-10 c.46.1.1 123699 1okgA 373 2.00e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.07e-09 1wv9A 94 3.12e-08 2b4uA 335 1.960 2f46A 156 2.922 2pt0A 340 3.093 1yn9A 169 6.592 2az4A 429 7.432 d.157.1.10 127597 1u24A 337 8.366 c.45.1.4 112968 2a5lA 200 11.06 c.23.5.8 126176 2b4pA 334 11.84 1bf6A 291 12.57 c.1.9.3 29065 2fdxA 138 12.61 c.23.5.1 31192 2gcgA 330 13.48 1vh0A 161 14.74 c.116.1.3 100626 2c46A 241 15.12 1ydgA 211 21.33 c.23.5.8 116614 2omkA 231 21.65 1ns5A 155 22.29 c.116.1.3 80705 1c3pA 375 22.51 c.42.1.2 32606 2qh8A 302 25.34 2i6jA 161 26.86 1o6dA 163 27.61 c.116.1.3 92567 5nul 138 27.85 1oywA 523 29.07 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1mb3A 124 29.11 c.23.1.1 78907 1oi7A 288 30.01 c.2.1.8,c.23.4.1 87049,87050 5nulA 138 30.32 c.23.5.1 31191 1xknA 355 30.79 d.126.1.6 115414 2hxpA 155 31.85 2cftA 298 33.19 3cwvA 369 33.92 1kgsA 225 34.57 a.4.6.1,c.23.1.1 68596,68597 2c2xA 281 35.42 1z5vA 474 35.80 1rxdA 159 36.26 c.45.1.1 111959 2hcrA 326 36.64 2jerA 389 37.18 1dkuA 317 39.14 c.61.1.2,c.61.1.2 34118,34119 2j16A 182 39.50 3b55A 451 39.67 1yz4A 160 40.92 1jayA 212 41.60 c.2.1.6 66478 1wy2A 351 45.24 2gxaA 274 45.66 2qr3A 140 47.16 1zsqA 528 47.19 b.55.1.8,c.45.1.3 125616,125617 2pcjA 224 49.13 1qd1A 325 50.72 d.58.34.1,d.58.34.1 39493,39494 2e7uA 424 51.48 2p5tB 253 53.30 1i9sA 210 53.54 c.45.1.1 62099 1gnlA 544 54.29 e.26.1.1 70287 1b00A 127 55.72 c.23.1.1 31122 2o4cA 380 56.22 2esbA 188 57.68 1oheA 348 57.68 c.45.1.1,c.45.1.1 87013,87014 2p4dA 172 58.69 2q1sA 377 59.04 1mvoA 136 59.92 c.23.1.1 79513 1ys7A 233 61.41 a.4.6.1,c.23.1.1 123961,123962 2v1xA 591 62.27 2j8gA 339 62.83 3b2yA 275 63.88 2qxyA 142 64.78 1vhoA 346 66.04 b.49.3.1,c.56.5.4 100694,100695 2nsmA 439 67.72 2r0bA 154 68.07 1edzA 320 69.17 c.2.1.7,c.58.1.2 30287,33935 1tqjA 230 70.23 c.1.2.2 107228 1u0sY 118 70.59 c.23.1.1 107566 1ag9A 175 71.21 c.23.5.1 31178 2imgA 151 71.75 1fpzA 212 72.15 c.45.1.1 59976 1b0aA 288 73.42 c.2.1.7,c.58.1.2 30286,33934 2nvrA 423 74.90 1jaeA 471 75.20 b.71.1.1,c.1.8.1 27773,28760 1ywfA 296 77.61 c.45.1.5 124144 2v5xA 388 78.21 2yv1A 294 79.37 2hcmA 164 79.57 1oaoA 674 80.31 e.26.1.2 86744 3crnA 132 80.63 2nt2A 145 81.11 3cvjA 243 82.77 1musA 477 83.84 c.55.3.4 79494 1bifA 469 85.07 c.37.1.7,c.60.1.4 31961,34003 1wrmA 165 86.65 2nv2A 294 87.09 1senA 164 87.39 c.47.1.1 105465 1s8nA 205 88.69 c.23.1.1 105374 2ohwA 133 88.70 1hp1A 516 88.70 d.114.1.1,d.159.1.2 70976,70977 2dm6A 333 88.90 b.35.1.2,c.2.1.1 131567,131568 1jpkA 388 89.55 c.1.22.1 67026