# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 1.59e-13 c.46.1.4 114639 1e0cA 271 2.72e-13 c.46.1.2,c.46.1.2 32717,32718 1qb0A 211 3.15e-13 c.46.1.1 32699 2gwfA 157 3.16e-13 c.46.1.4 135802 2hhgA 139 3.85e-13 2oucA 142 2.43e-12 1gmxA 108 4.55e-12 c.46.1.3 65355 2a2kA 175 4.70e-12 1rhs 296 5.13e-12 1yt8A 539 7.99e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2j6pA 152 1.13e-11 1uarA 285 1.52e-11 c.46.1.2,c.46.1.2 107762,107763 1t3kA 152 3.41e-11 c.46.1.1 106357 1rhsA 296 3.64e-11 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 6.08e-11 c.46.1.1 123699 2fsxA 148 7.04e-11 1okgA 373 1.60e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.14e-09 1wv9A 94 3.55e-08 2az4A 429 2.852 d.157.1.10 127597 2pt0A 340 3.408 2b4uA 335 4.793 2f46A 156 4.915 2gcgA 330 8.026 2a5lA 200 9.064 c.23.5.8 126176 2fdxA 138 12.76 c.23.5.1 31192 2c46A 241 15.93 2c2xA 281 17.37 2omkA 231 17.82 1u24A 337 18.93 c.45.1.4 112968 1bf6A 291 19.32 c.1.9.3 29065 1yn9A 169 20.05 1xknA 355 20.34 d.126.1.6 115414 1dkuA 317 20.95 c.61.1.2,c.61.1.2 34118,34119 1mb3A 124 23.55 c.23.1.1 78907 2cftA 298 24.51 2hcrA 326 25.48 2q1sA 377 27.53 2gxaA 274 27.79 2jerA 389 27.92 1ydgA 211 28.11 c.23.5.8 116614 1vh0A 161 29.75 c.116.1.3 100626 5nul 138 30.71 1c3pA 375 34.13 c.42.1.2 32606 2qr3A 140 35.21 5nulA 138 35.33 c.23.5.1 31191 2e7uA 424 36.62 1qd1A 325 37.25 d.58.34.1,d.58.34.1 39493,39494 2i6jA 161 37.43 2b4pA 334 38.76 1oi7A 288 41.88 c.2.1.8,c.23.4.1 87049,87050 1jayA 212 42.13 c.2.1.6 66478 2j3hA 345 42.31 2nvrA 423 42.56 2vq3A 215 42.63 1kgsA 225 43.92 a.4.6.1,c.23.1.1 68596,68597 1zsqA 528 44.08 b.55.1.8,c.45.1.3 125616,125617 2hxpA 155 45.64 2qh8A 302 46.22 1z5vA 474 47.50 1bifA 469 48.80 c.37.1.7,c.60.1.4 31961,34003 2p5tB 253 48.91 3cwvA 369 49.27 2qxyA 142 49.93 2yv1A 294 52.75 1b00A 127 54.77 c.23.1.1 31122 3b55A 451 56.68 2j8gA 339 57.51 1gpjA 404 58.05 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1i9sA 210 61.19 c.45.1.1 62099 1x13A 401 62.99 1oywA 523 63.70 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1b0aA 288 65.55 c.2.1.7,c.58.1.2 30286,33934 3c10A 423 68.02 1fpzA 212 69.24 c.45.1.1 59976 2nv2A 294 70.46 1ys7A 233 70.51 a.4.6.1,c.23.1.1 123961,123962 1wy2A 351 73.13 2imgA 151 73.76 2oafA 151 73.95 2esbA 188 74.44 1mvoA 136 74.55 c.23.1.1 79513 1edzA 320 75.13 c.2.1.7,c.58.1.2 30287,33935 1jaeA 471 75.96 b.71.1.1,c.1.8.1 27773,28760 1yz4A 160 76.16 2pcjA 224 77.59 2qahA 303 82.35 1ywfA 296 83.85 c.45.1.5 124144 1i3cA 149 84.94 c.23.1.1 71112 1rxdA 159 85.16 c.45.1.1 111959 3crnA 132 86.18 1u0sY 118 87.23 c.23.1.1 107566 1wwkA 307 87.29 1cex 214 87.44 1xxpA 306 88.26 c.45.1.2 122423