# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e0cA 271 1.77e-19 c.46.1.2,c.46.1.2 32717,32718 1whbA 157 2.32e-18 c.46.1.4 114639 2hhgA 139 3.19e-18 2gwfA 157 5.18e-18 c.46.1.4 135802 2oucA 142 8.97e-18 1qb0A 211 1.10e-17 c.46.1.1 32699 1rhs 296 1.67e-17 1yt8A 539 3.00e-17 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 4.68e-17 c.46.1.2,c.46.1.2 107762,107763 1gmxA 108 5.97e-17 c.46.1.3 65355 2j6pA 152 1.68e-16 2a2kA 175 2.55e-16 1rhsA 296 3.48e-16 c.46.1.2,c.46.1.2 32703,32704 1okgA 373 1.15e-15 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1t3kA 152 1.34e-15 c.46.1.1 106357 2fsxA 148 9.82e-15 1ymkA 175 1.56e-14 c.46.1.1 123699 2eg4A 230 1.19e-13 1wv9A 94 2.77e-11 2b4uA 335 3.312 1yn9A 169 4.309 2pt0A 340 4.493 2b4pA 334 4.496 1bf6A 291 4.571 c.1.9.3 29065 1vh0A 161 4.799 c.116.1.3 100626 2fdxA 138 4.951 c.23.5.1 31192 2f46A 156 5.337 2e7uA 424 6.250 1u24A 337 6.307 c.45.1.4 112968 2omkA 231 7.187 1oywA 523 7.665 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 5nulA 138 9.532 c.23.5.1 31191 1oaoA 674 10.60 e.26.1.2 86744 1orrA 347 10.82 c.2.1.2 93460 2az4A 429 11.68 d.157.1.10 127597 3cwvA 369 13.16 2c2xA 281 14.86 2c46A 241 15.01 1ns5A 155 15.49 c.116.1.3 80705 2qh8A 302 16.32 2a5lA 200 16.45 c.23.5.8 126176 5nul 138 16.47 1rxdA 159 17.91 c.45.1.1 111959 1ydgA 211 18.66 c.23.5.8 116614 1o6dA 163 19.34 c.116.1.3 92567 1zsqA 528 22.45 b.55.1.8,c.45.1.3 125616,125617 2j3hA 345 23.45 1npyA 271 24.89 c.2.1.7,c.58.1.5 85995,85996 2c6cA 707 25.43 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2gcgA 330 25.46 1mb3A 124 27.14 c.23.1.1 78907 1vl2A 421 27.39 c.26.2.1,d.210.1.1 108708,108709 1oi7A 288 28.19 c.2.1.8,c.23.4.1 87049,87050 1sffA 426 29.71 c.67.1.4 105482 2z6rA 265 30.73 2vafA 378 31.05 2jerA 389 32.50 2r7aA 256 34.08 1gpjA 404 34.84 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2hxpA 155 35.01 1kgsA 225 35.36 a.4.6.1,c.23.1.1 68596,68597 2hcrA 326 35.80 1xknA 355 36.44 d.126.1.6 115414 1dkuA 317 37.06 c.61.1.2,c.61.1.2 34118,34119 2esbA 188 37.27 2hp1A 432 37.73 1jayA 212 39.34 c.2.1.6 66478 1g2qA 187 39.94 c.61.1.1 65117 2gxaA 274 40.12 2yzkA 178 41.32 1oheA 348 41.36 c.45.1.1,c.45.1.1 87013,87014 2ax3A 502 41.75 c.72.1.4,c.104.1.1 127477,127478 2cftA 298 44.34 2v1xA 591 45.43 2yv1A 294 45.69 2j9iA 421 46.11 2i6jA 161 47.47 3cklA 298 47.70 2imgA 151 49.93 1vhwA 253 49.97 c.56.2.1 100706 1ys7A 233 50.75 a.4.6.1,c.23.1.1 123961,123962 1p15A 253 52.54 c.45.1.2 93894 2eo5A 419 53.39 2ohwA 133 54.19 1b0aA 288 56.90 c.2.1.7,c.58.1.2 30286,33934 1heiA 451 56.95 c.37.1.14,c.37.1.14 32463,32464 2pcjA 224 58.30 1t4bA 367 58.49 c.2.1.3,d.81.1.1 106406,106407 2qvcA 313 60.70 1yxyA 234 62.76 c.1.2.5 124203 1zzwA 149 65.92 1cb0A 283 66.73 c.56.2.1 33790 2ieaA 886 68.10 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1huxA 270 68.89 c.55.1.5 61278 1fpzA 212 68.90 c.45.1.1 59976 2q1sA 377 69.30 2e0tA 151 69.68 1i9sA 210 69.96 c.45.1.1 62099 2uytA 489 70.76 1b00A 127 70.88 c.23.1.1 31122 3b55A 451 70.99 1moqA 368 71.37 c.80.1.1 35302 2pzmA 330 71.82 2vq3A 215 72.49 1vi2A 300 73.98 c.2.1.7,c.58.1.5 100726,100727 2p4gA 270 74.18 1ywfA 296 74.94 c.45.1.5 124144 2fe7A 166 77.65 d.108.1.1 133325 2r0bA 154 81.75 2no4A 240 81.77 1dljA 402 82.12 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2b8nA 429 82.20 c.118.1.1 128093 1cbfA 285 83.20 c.90.1.1 35587 1qd1A 325 84.42 d.58.34.1,d.58.34.1 39493,39494 1n2zA 245 84.55 c.92.2.2 79865 1wy2A 351 86.27 1vzwA 244 87.07 c.1.2.1 120553 1gnlA 544 87.16 e.26.1.1 70287 1widA 130 87.22 b.142.1.2 114667 1cex 214 87.65 1yfsA 465 89.18 a.203.1.1,d.104.1.1 123088,123089 3crnA 132 89.26 2epjA 434 89.29 2f4dA 184 89.65