# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e0cA 271 7.62e-15 c.46.1.2,c.46.1.2 32717,32718 1whbA 157 9.53e-15 c.46.1.4 114639 2hhgA 139 1.31e-14 2gwfA 157 1.52e-14 c.46.1.4 135802 1qb0A 211 1.81e-14 c.46.1.1 32699 2oucA 142 1.58e-13 1gmxA 108 2.25e-13 c.46.1.3 65355 1rhs 296 2.66e-13 2a2kA 175 3.05e-13 1yt8A 539 3.46e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 7.34e-13 c.46.1.2,c.46.1.2 107762,107763 2j6pA 152 7.99e-13 1t3kA 152 1.52e-12 c.46.1.1 106357 2fsxA 148 2.21e-12 1rhsA 296 3.20e-12 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 9.02e-12 c.46.1.1 123699 1okgA 373 1.09e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.13e-10 1wv9A 94 1.63e-08 2b4uA 335 2.594 2pt0A 340 7.342 2az4A 429 8.167 d.157.1.10 127597 1yn9A 169 8.655 2f46A 156 9.453 1bf6A 291 12.69 c.1.9.3 29065 1mb3A 124 13.41 c.23.1.1 78907 2c46A 241 15.24 1jayA 212 16.74 c.2.1.6 66478 1kgsA 225 17.94 a.4.6.1,c.23.1.1 68596,68597 2hcrA 326 19.66 2fdxA 138 21.07 c.23.5.1 31192 1dkuA 317 22.27 c.61.1.2,c.61.1.2 34118,34119 2b4pA 334 23.42 1vl2A 421 25.02 c.26.2.1,d.210.1.1 108708,108709 2a5lA 200 25.79 c.23.5.8 126176 2i6jA 161 26.91 1ys7A 233 27.61 a.4.6.1,c.23.1.1 123961,123962 1oi7A 288 28.23 c.2.1.8,c.23.4.1 87049,87050 1oywA 523 29.00 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1i9sA 210 29.26 c.45.1.1 62099 1bifA 469 31.13 c.37.1.7,c.60.1.4 31961,34003 2qr3A 140 31.54 1u24A 337 32.18 c.45.1.4 112968 2omkA 231 32.31 1rxdA 159 33.41 c.45.1.1 111959 1mvoA 136 34.83 c.23.1.1 79513 3cwvA 369 36.52 2qxyA 142 38.61 2yv1A 294 41.79 2hxpA 155 42.13 3crnA 132 44.05 1npyA 271 44.06 c.2.1.7,c.58.1.5 85995,85996 1yz4A 160 44.08 2qh8A 302 44.21 1fpzA 212 44.43 c.45.1.1 59976 2ieaA 886 44.85 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1u0sY 118 47.73 c.23.1.1 107566 1c3pA 375 47.90 c.42.1.2 32606 2esbA 188 49.89 2c2xA 281 50.89 1ydgA 211 51.66 c.23.5.8 116614 1b00A 127 52.00 c.23.1.1 31122 5nul 138 52.33 1zavA 180 52.99 1dbwA 126 53.28 c.23.1.1 31095 1xxpA 306 56.30 c.45.1.2 122423 1ns5A 155 58.07 c.116.1.3 80705 3cumA 302 62.54 1bif 469 63.44 2p4dA 172 63.78 2q1sA 377 64.31 2p5tB 253 64.87 2j3hA 345 65.10 1xknA 355 66.19 d.126.1.6 115414 2cftA 298 68.81 2b8nA 429 70.55 c.118.1.1 128093 1srrA 124 74.52 c.23.1.1 31110 1qd1A 325 76.49 d.58.34.1,d.58.34.1 39493,39494 1s8nA 205 76.64 c.23.1.1 105374 2oafA 151 76.86 2v1xA 591 77.11 1zsqA 528 77.29 b.55.1.8,c.45.1.3 125616,125617 2jbaA 127 77.53 1h2eA 207 77.74 c.60.1.1 70857 1p15A 253 77.88 c.45.1.2 93894 2b5gA 171 78.31 d.108.1.1 127892 1v4vA 376 78.88 c.87.1.3 100313 2gxaA 274 79.47 2jerA 389 81.31 1sffA 426 83.09 c.67.1.4 105482 1jakA 512 84.38 c.1.8.6,d.92.2.1 66472,66473 1ywfA 296 86.36 c.45.1.5 124144 2uytA 489 87.61 1jaeA 471 89.28 b.71.1.1,c.1.8.1 27773,28760