# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e0cA 271 4.51e-14 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 8.07e-14 1whbA 157 9.87e-14 c.46.1.4 114639 2gwfA 157 1.36e-13 c.46.1.4 135802 1qb0A 211 1.51e-13 c.46.1.1 32699 1rhs 296 1.29e-12 1gmxA 108 1.35e-12 c.46.1.3 65355 1yt8A 539 1.59e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2oucA 142 1.63e-12 2a2kA 175 2.33e-12 1uarA 285 2.76e-12 c.46.1.2,c.46.1.2 107762,107763 2j6pA 152 5.20e-12 1t3kA 152 1.08e-11 c.46.1.1 106357 2fsxA 148 1.16e-11 1rhsA 296 1.36e-11 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 6.10e-11 c.46.1.1 123699 1okgA 373 5.02e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 5.62e-10 1wv9A 94 4.83e-08 2b4uA 335 2.180 2az4A 429 5.521 d.157.1.10 127597 2pt0A 340 6.956 2f46A 156 7.902 1yn9A 169 11.16 2fdxA 138 11.55 c.23.5.1 31192 1bf6A 291 14.26 c.1.9.3 29065 1mb3A 124 15.11 c.23.1.1 78907 1jayA 212 15.32 c.2.1.6 66478 1kgsA 225 17.83 a.4.6.1,c.23.1.1 68596,68597 2c46A 241 18.06 2hcrA 326 18.28 1dkuA 317 22.26 c.61.1.2,c.61.1.2 34118,34119 2b4pA 334 23.09 1rxdA 159 23.21 c.45.1.1 111959 2i6jA 161 25.56 5nul 138 25.99 1ys7A 233 26.37 a.4.6.1,c.23.1.1 123961,123962 1oi7A 288 27.06 c.2.1.8,c.23.4.1 87049,87050 2yv1A 294 28.63 2qh8A 302 29.18 2a5lA 200 29.33 c.23.5.8 126176 1u24A 337 29.63 c.45.1.4 112968 1i9sA 210 30.54 c.45.1.1 62099 1c3pA 375 30.76 c.42.1.2 32606 1mvoA 136 31.09 c.23.1.1 79513 1oywA 523 31.11 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yz4A 160 32.44 2hxpA 155 34.92 2qr3A 140 35.18 2qxyA 142 37.47 2esbA 188 41.11 1npyA 271 43.42 c.2.1.7,c.58.1.5 85995,85996 1fpzA 212 43.57 c.45.1.1 59976 2p5tB 253 44.42 3cumA 302 44.66 3crnA 132 45.11 2q1sA 377 46.07 1ydgA 211 48.33 c.23.5.8 116614 2cftA 298 48.63 2omkA 231 48.85 1u0sY 118 50.81 c.23.1.1 107566 1vl2A 421 52.52 c.26.2.1,d.210.1.1 108708,108709 1b00A 127 52.68 c.23.1.1 31122 1s8nA 205 52.87 c.23.1.1 105374 1dbwA 126 53.50 c.23.1.1 31095 1srrA 124 58.12 c.23.1.1 31110 1bifA 469 58.20 c.37.1.7,c.60.1.4 31961,34003 2p4dA 172 58.88 3cwvA 369 61.63 1jx6A 342 62.16 c.93.1.1 67406 2jbaA 127 67.29 5nulA 138 68.19 c.23.5.1 31191 2qvcA 313 69.37 1gpjA 404 69.58 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1xknA 355 69.67 d.126.1.6 115414 1h2eA 207 70.24 c.60.1.1 70857 2j3hA 345 70.97 1wrmA 165 71.02 1sffA 426 71.14 c.67.1.4 105482 1ywfA 296 71.60 c.45.1.5 124144 2jerA 389 73.17 1p15A 253 74.24 c.45.1.2 93894 2v5xA 388 74.26 3cfyA 137 75.01 1u8tA 129 75.23 c.23.1.1 113192 2c2xA 281 75.28 1v4vA 376 75.40 c.87.1.3 100313 1jbeA 128 75.70 c.23.1.1 62845 1jyeA 349 78.26 c.93.1.1 67455 2imgA 151 78.67 1ns5A 155 78.73 c.116.1.3 80705 1xxpA 306 80.73 c.45.1.2 122423 2v1xA 591 80.94 1zzwA 149 81.83 1jakA 512 83.49 c.1.8.6,d.92.2.1 66472,66473 2j16A 182 83.61 2r0bA 154 86.00 2b5gA 171 87.92 d.108.1.1 127892 3brqA 296 89.20 1zgzA 122 89.73 c.23.1.1 125065